Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq176294 116 4e-21 seq159113 111 2e-19 seq44755 98.7 9e-16 seq44752 95.1 1e-14 seq92079 93.3 4e-14 >seq176294 Length=1487 Score = 116 bits (128), Expect = 4e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 26766 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCA 26825 |||||||| | || || || || |||| || || | || || |||| | || || Sbjct 797 AAAATGCAGATCTTCGTCAAGACCCTAACCGGCAAGACCATTACTCTCGAGGTGGAGCCA 856 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 | |||||||||||| | || || ||||||| |||||||| || || || || || Sbjct 857 AGTGACACCATCGAGAATGTAAAGGCAAAGATTCAGGACAAAGAGGGTATTCCCCCTGAC 916 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 || || ||||| || | || || |||||||| ||||||| | | | | |||||||| Sbjct 917 CAGCAGAGACTGATCTTCGCTGGAAAACAACTTGAAGATGGTCGCACTCTTAGCGACTAC 976 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 ||||| ||||| ||||||||| | ||| |||| || | ||| | || |||| Sbjct 977 AACATCCAAAAGGAATCTACTCTTCATTTGGTGTTGCGCCTTCGTGGTGGAA 1028 Score = 105 bits (116), Expect = 6e-18 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 26796 GGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAG 26855 |||||| |||||||| ||||| | || ||| ||||| ||||| | |||||| || Sbjct 1265 GGAAAAACGATCACCCTCGAAGTCGAGCCAAGTGACACGATCGAAAACGTCAAAGCCAAA 1324 Query 26856 ATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAA 26915 || |||||||| || || || || || || || || || || | || |||||| || Sbjct 1325 ATCCAGGACAAAGAGGGCATTCCCCCAGACCAGCAGAGGCTTATCTTCGCCGGCAAGCAG 1384 Query 26916 CTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTG 26975 || || |||| | | | | |||||||| ||||| || |||||||| || | |||||| Sbjct 1385 CTTGAGGATGGACGTACCCTGAGCGACTACAACATCCAGAAAGAATCCACCCTTCATCTG 1444 Query 26976 GTCCTG 26981 |||||| Sbjct 1445 GTCCTG 1450 >seq159113 Length=23055 Score = 111 bits (122), Expect = 2e-19 Identities = 136/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 26796 GGAAAATCGATCACCATCGAATTAGAATCAAACGACACCATCGAGCAAGTCAAACAAAAG 26855 |||||| |||||||| ||||| | || ||| ||||| ||||| | |||||| || Sbjct 22586 GGAAAAACGATCACCCTCGAAGTTGAGCCAAGTGACACGATCGAAAACGTCAAAGCCAAA 22645 Query 26856 ATTACCGACAAAGAAGGGATACCTCCCGATCAACAAAGACTCATTTACGGCGGCAAACAA 26915 || |||||||| || || || || || || || || || || | || ||||||||| Sbjct 22646 ATCCAGGACAAAGAGGGCATTCCCCCAGACCAGCAGAGGCTTATCTTCGCCGGCAAACAG 22705 Query 26916 CTCGAAGATGATAGAAACGTCAGCGACTATAACATTCAAAAAGAATCTACTATCCATCTG 26975 || || |||| | | | | || ||||| ||||| || |||||||| ||| | |||||| Sbjct 22706 CTGGAGGATGGACGTACCCTGAGTGACTACAACATCCAGAAAGAATCCACTCTTCATCTG 22765 Query 26976 GTCCTG 26981 |||||| Sbjct 22766 GTCCTG 22771 >seq44755 Length=507 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | || || ||||| | ||||| || | |||||| | ||| | || | | | Sbjct 424 ATGCAGATCTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTGGAAGTTGAGCCCAGC 365 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || ||||| ||||| ||||| || |||||||| || Sbjct 364 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCCGACCAG 305 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | || |||||| || || || |||| | | | | |||||||| ||| Sbjct 304 CAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGTACTCTGAGCGACTACAAC 245 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || ||||| || |||| || || || Sbjct 244 ATCCAGAAGGAATCCACGCTCCACCTTGTTCT 213 >seq44752 Length=2393 Score = 95.1 bits (104), Expect = 1e-14 Identities = 109/147 (74%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 71717 GAGGGTAAAATTCACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACT 71776 ||||| || || || |||| |||||||||||||||||||| |||||||| || |||||| Sbjct 2186 GAGGGCAAGATGCATGGATTTCTACGCATGTACTGGGCCAAGAAGATTCTGGAATGGACT 2245 Query 71777 CAAACTCCCGAGCAGGCGCTCGAGTATTCTATTTATCTAAACGATAGATACAGTCTCGAC 71836 || |||| || || || | | | || ||||| ||||| | |||||| | || Sbjct 2246 GAATCTCCGGAAACAGCTCTGGCTACTGCGATCTATCTGAACGACAAGTACAGTTTGGAT 2305 Query 71837 GGTCGCGATCCTAACGGTTATGTCGGT 71863 || |||||||| | || ||||| ||| Sbjct 2306 GGACGCGATCCCAGTGGCTATGTTGGT 2332 >seq92079 Length=17510 Score = 93.3 bits (102), Expect = 4e-14 Identities = 112/149 (75%), Gaps = 4/149 (3%) Strand=Plus/Plus Query 71717 GAGGGTAAAATTCACGGATACCTACGCATGTACTGGGCCAAAAAGATTCTCGAGTGGACT 71776 ||||| || || || |||| |||||||||||||||||||| || ||||| || |||||| Sbjct 1965 GAGGGCAAGATGCATGGATTTCTACGCATGTACTGGGCCAAGAAAATTCTGGAATGGACT 2024 Query 71777 CAAACTCCCGAGCAGGCGCTC-GAGTA-TTCTATTTATCTAAACGATAGATACAGTCTCG 71834 || |||| || | ||||| | || | | || || || ||||| | |||||| | | Sbjct 2025 GAATCTCCTGA--AACCGCTCTGGCTACTGCGATCTACCTGAACGACAAGTACAGTTTGG 2082 Query 71835 ACGGTCGCGATCCTAACGGTTATGTCGGT 71863 | || |||||||| | |||||||| ||| Sbjct 2083 ATGGGCGCGATCCCAGTGGTTATGTGGGT 2111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 477535108165040