Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq44860 116 1e-20 seq60558 111 4e-19 seq118985 100 7e-16 >seq44860 Length=53707 Score = 116 bits (128), Expect = 1e-20 Identities = 147/202 (73%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 364074 GTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCAT 364133 ||| ||||| || || || | ||| |||||||| ||||||||||| |||| |||||| Sbjct 4286 GTACGAATCTGAAGGCAAAGGTCGCAAGACAATCAAAGCACAGAAGCTGTGGTATGCCAT 4345 Query 364134 CATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCG 364193 || || |||| | ||||| ||||| ||||| ||| | ||||| || | |||||||| Sbjct 4346 TATCGAGGCGCAAGTCGAGACCGGAACTCCCTACATGCTCTACAAGGACGCCTGCAACCG 4405 Query 364194 CAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTAT 364253 ||| |||||| ||| || | || || || || |||||| | || || |||||| | Sbjct 4406 GAAGAGCAACCAACAGAACTTGGGCACCATCAAGTGCAGCAACTTGTGCACGGAGATTGT 4465 Query 364254 TGAATACACCGCTCCCGACGAG 364275 || || | | |||||| ||| Sbjct 4466 GGAGTATAGCAGTCCCGATGAG 4487 >seq60558 Length=5495 Score = 111 bits (122), Expect = 4e-19 Identities = 142/193 (74%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 364084 GAGGG-AAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTC 364142 ||||| |||||| || ||||| || ||||||||||| |||| |||||||| || | Sbjct 3583 GAGGGCAAAGGC-CGCAAGACGATCAAAGCACAGAAGCTGTGGTACGCCATCATCGAGGC 3641 Query 364143 GCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAA 364202 || | || ||||| || ||||||||| ||||||| || | |||||||| ||| ||| Sbjct 3642 CCAAGTAGAAACAGGCACGCCCTATATGCTGTACAAGGACGCCTGCAACCGGAAGAGCAA 3701 Query 364203 CCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACAC 364262 ||| ||| || | || || || || |||||||| || || |||||| | || || | Sbjct 3702 CCAACAGAACTTGGGCACCATCAAGTGCAGCAACCTGTGCACGGAGATTGTGGAGTATAG 3761 Query 364263 CGCTCCCGACGAG 364275 | |||||| ||| Sbjct 3762 CAGTCCCGATGAG 3774 Score = 91.5 bits (100), Expect = 4e-13 Identities = 110/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 363837 AGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCT 363896 ||| |||||||| || || |||||||| || ||||| || ||||| || || || Sbjct 2146 AGGCGCGTTTGCCATCTACCTCGAGCCATGGCACGCCGACATCTTTGATTTCCTCGACTG 2205 Query 363897 CCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGT 363956 ||| || ||||| || || ||||| ||| ||||||||||| || ||||| | ||| | Sbjct 2206 CCGCAAGAACACCGGCAAGGAGGAGCAGCGAGCACGTGATCTCTTTTATGCGGTCTGGAT 2265 Query 363957 TTCTGACCATTTTATGAAGCGCGTGGAGGC 363986 | || | || ||||||||||| ||||| Sbjct 2266 CCCGGATCTCTTCATGAAGCGCGTTGAGGC 2295 >seq118985 Length=20984 Score = 100 bits (110), Expect = 7e-16 Identities = 97/122 (80%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 12803 TAATATGACGGATTACATATGTTGATCCAAATGTCAGAGAATCCATGTCTTCAGTTGCTG 12862 ||| ||| || | || | ||| |||||||| || |||| |||||| ||||| ||| | | Sbjct 14437 TAAGATGTCGCAGTAAAATTGTGGATCCAAAAGTGAGAGCATCCATATCTTCTGTTCCCG 14378 Query 12863 TGGCATACGCTTTTCCTGTTTTTACATATGCAGCACA-TGTAGCTTCGGCCTCACATGGT 12921 | |||||| ||||||| | ||| ||| |||||||| ||| |||||||||||||||||| Sbjct 14377 TTGCATACACTTTTCCCGCTTTCACAAGGGCAGCACACTGT-GCTTCGGCCTCACATGGT 14319 Query 12922 GC 12923 || Sbjct 14318 GC 14317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1300207350434274