Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11]
188,407 sequences; 1,026,046,400 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq44860 116 1e-20
seq60558 111 4e-19
seq118985 100 7e-16
>seq44860
Length=53707
Score = 116 bits (128), Expect = 1e-20
Identities = 147/202 (73%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 364074 GTATGAATCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCAT 364133
||| ||||| || || || | ||| |||||||| ||||||||||| |||| ||||||
Sbjct 4286 GTACGAATCTGAAGGCAAAGGTCGCAAGACAATCAAAGCACAGAAGCTGTGGTATGCCAT 4345
Query 364134 CATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCG 364193
|| || |||| | ||||| ||||| ||||| ||| | ||||| || | ||||||||
Sbjct 4346 TATCGAGGCGCAAGTCGAGACCGGAACTCCCTACATGCTCTACAAGGACGCCTGCAACCG 4405
Query 364194 CAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTAT 364253
||| |||||| ||| || | || || || || |||||| | || || |||||| |
Sbjct 4406 GAAGAGCAACCAACAGAACTTGGGCACCATCAAGTGCAGCAACTTGTGCACGGAGATTGT 4465
Query 364254 TGAATACACCGCTCCCGACGAG 364275
|| || | | |||||| |||
Sbjct 4466 GGAGTATAGCAGTCCCGATGAG 4487
>seq60558
Length=5495
Score = 111 bits (122), Expect = 4e-19
Identities = 142/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 364084 GAGGG-AAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTC 364142
||||| |||||| || ||||| || ||||||||||| |||| |||||||| || |
Sbjct 3583 GAGGGCAAAGGC-CGCAAGACGATCAAAGCACAGAAGCTGTGGTACGCCATCATCGAGGC 3641
Query 364143 GCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAA 364202
|| | || ||||| || ||||||||| ||||||| || | |||||||| ||| |||
Sbjct 3642 CCAAGTAGAAACAGGCACGCCCTATATGCTGTACAAGGACGCCTGCAACCGGAAGAGCAA 3701
Query 364203 CCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACAC 364262
||| ||| || | || || || || |||||||| || || |||||| | || || |
Sbjct 3702 CCAACAGAACTTGGGCACCATCAAGTGCAGCAACCTGTGCACGGAGATTGTGGAGTATAG 3761
Query 364263 CGCTCCCGACGAG 364275
| |||||| |||
Sbjct 3762 CAGTCCCGATGAG 3774
Score = 91.5 bits (100), Expect = 4e-13
Identities = 110/150 (73%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 363837 AGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCT 363896
||| |||||||| || || |||||||| || ||||| || ||||| || || ||
Sbjct 2146 AGGCGCGTTTGCCATCTACCTCGAGCCATGGCACGCCGACATCTTTGATTTCCTCGACTG 2205
Query 363897 CCGGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGT 363956
||| || ||||| || || ||||| ||| ||||||||||| || ||||| | ||| |
Sbjct 2206 CCGCAAGAACACCGGCAAGGAGGAGCAGCGAGCACGTGATCTCTTTTATGCGGTCTGGAT 2265
Query 363957 TTCTGACCATTTTATGAAGCGCGTGGAGGC 363986
| || | || ||||||||||| |||||
Sbjct 2266 CCCGGATCTCTTCATGAAGCGCGTTGAGGC 2295
>seq118985
Length=20984
Score = 100 bits (110), Expect = 7e-16
Identities = 97/122 (80%), Gaps = 2/122 (2%)
Strand=Plus/Minus
Query 12803 TAATATGACGGATTACATATGTTGATCCAAATGTCAGAGAATCCATGTCTTCAGTTGCTG 12862
||| ||| || | || | ||| |||||||| || |||| |||||| ||||| ||| | |
Sbjct 14437 TAAGATGTCGCAGTAAAATTGTGGATCCAAAAGTGAGAGCATCCATATCTTCTGTTCCCG 14378
Query 12863 TGGCATACGCTTTTCCTGTTTTTACATATGCAGCACA-TGTAGCTTCGGCCTCACATGGT 12921
| |||||| ||||||| | ||| ||| |||||||| ||| ||||||||||||||||||
Sbjct 14377 TTGCATACACTTTTCCCGCTTTCACAAGGGCAGCACACTGT-GCTTCGGCCTCACATGGT 14319
Query 12922 GC 12923
||
Sbjct 14318 GC 14317
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1300207350434274
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |