Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq176294 122 7e-23 seq44755 113 4e-20 >seq176294 Length=1487 Score = 122 bits (134), Expect = 7e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 23988 AAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCC 24047 |||||||| | || || || || |||| || || | ||||| |||| || ||| | Sbjct 797 AAAATGCAGATCTTCGTCAAGACCCTAACCGGCAAGACCATTACTCTCGAGGTGGAGCCA 856 Query 24048 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGAT 24107 | |||||||||||| | || || ||||||| |||||||| || || || || || Sbjct 857 AGTGACACCATCGAGAATGTAAAGGCAAAGATTCAGGACAAAGAGGGTATTCCCCCTGAC 916 Query 24108 CAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTAT 24167 || ||||||||||| | || || || ||||| ||||||| | | | ||||| || Sbjct 917 CAGCAGAGACTGATCTTCGCTGGAAAACAACTTGAAGATGGTCGCACTCTTAGCGACTAC 976 Query 24168 AACATTCAAAAAGAATCTACAATTCATTTAGTGTT 24202 ||||| ||||| |||||||| ||||||| ||||| Sbjct 977 AACATCCAAAAGGAATCTACTCTTCATTTGGTGTT 1011 Score = 107 bits (118), Expect = 2e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 24018 GGAAAATCGATTACCATCGAAGTCGAGGCCAACGACACCATCGAGCAAGTCAAACAAAAG 24077 |||||| |||| ||| ||||||||||| | | ||||| ||||| | |||||| || Sbjct 1265 GGAAAAACGATCACCCTCGAAGTCGAGCCAAGTGACACGATCGAAAACGTCAAAGCCAAA 1324 Query 24078 ATTACCGACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAA 24137 || |||||||| ||||| || || || || ||||| || || | || ||||||||| Sbjct 1325 ATCCAGGACAAAGAGGGCATTCCCCCAGACCAGCAGAGGCTTATCTTCGCCGGCAAGCAG 1384 Query 24138 CTCGAAGATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCAT 24194 || || |||| | | | | ||||| || ||||| || |||||||| || ||||| Sbjct 1385 CTTGAGGATGGACGTACCCTGAGCGACTACAACATCCAGAAAGAATCCACCCTTCAT 1441 >seq44755 Length=507 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| | ||||| || | || ||| | ||||| ||| ||| | Sbjct 424 ATGCAGATCTTCGTGAAAACCCTGACTGGCAAGACCATCACCCTGGAAGTTGAGCCCAGC 365 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || ||||| ||||| |||||||| |||||||| || Sbjct 364 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCCGACCAG 305 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||||| ||||| | || ||||||||| || || |||| | | | ||||| || ||| Sbjct 304 CAGAGGCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGTACTCTGAGCGACTACAAC 245 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || ||||| || Sbjct 244 ATCCAGAAGGAATCCAC 228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428948776523085