Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq26467 111 1e-19 seq159113 107 1e-18 seq158401 107 1e-18 seq120978 104 2e-17 seq22085 104 2e-17 seq152678 102 5e-17 seq52247 100 2e-16 seq176294 93.3 3e-14 seq44755 84.2 1e-11 >seq26467 Length=1226 Score = 111 bits (122), Expect = 1e-19 Identities = 165/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | || || | |||||||| ||||| |||||| || || ||||| || Sbjct 812 TACCACCGCGCAGGCGAAGGACCAAATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGC 753 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 || | ||| |||| || | ||||| ||||| ||||| || | || || |||| | Sbjct 752 TCAGAGTACGACCGTCCTCCAGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCGGGAG 693 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||| |||||| || || ||||||||||| || ||||| | ||| | Sbjct 692 GGATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGTTCGA 633 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTTTT 38322 | || | ||| ||||| || || || | |||||||| || ||||||||| ||| Sbjct 632 CCTCGAGTGTGATAGTCTTTCCAGTAAGTGTTTTCACAAAAATCTGCATGATTT 579 >seq159113 Length=23055 Score = 107 bits (118), Expect = 1e-18 Identities = 157/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 |||||||||||||||||||| |||||||| |||||||| || | | || | Sbjct 22298 CGCAACACCAAATGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTAAGAGTGCGACCA 22239 Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 || || | ||||||||| || || ||||| | || || || | ||| | || |||||| Sbjct 22238 TCTTCAAGTTGTTTTCCAGCGAAGATTAGCCTCTGCTGGTCAGGGGGAATACCCTCTTTG 22179 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT---TCAACTTCTAATGTA 38279 ||| ||| ||| ||| ||||||| || || | ||||| || || || | ||| Sbjct 22178 TCCTGAATCTTTGCCTTTACATTCTCGATTGTGT---CACTTGGCTCCACCTCGAGAGTA 22122 Query 38280 ATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || || || |||| ||| || ||||| |||||||| || Sbjct 22121 ATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATTTT 22081 >seq158401 Length=12963 Score = 107 bits (118), Expect = 1e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 ||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||| Sbjct 2372 CTCTCTCTTCAAAGTGCTTTTCAACTTTCCCTCACGGTACTTGTTTGCTATCGGACTCGT 2313 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 2312 GCAAGTATTTAGCCTTA 2296 >seq120978 Length=37574 Score = 104 bits (114), Expect = 2e-17 Identities = 118/158 (75%), Gaps = 3/158 (2%) Strand=Plus/Plus Query 6327 AAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTC 6386 || || || || ||||| || ||||| || |||||| || ||| |||||||||| | Sbjct 31810 AAGTACTTTGGCTGCGAGCTGGGCGCCCAAGTGCAGTTCGA---CAAGAACGAGCGCTAC 31866 Query 6387 ATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGC 6446 ||||| |||||| ||| || | | |||||||||||| | || || |||||||| | Sbjct 31867 ATCGTGAACGGAAGTCATGACGCGGGCAAGCTGCAGGATCTGCTCGATGGCTTTATCAGG 31926 Query 6447 AAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484 ||||| |||||||| | || ||||| || || ||||| Sbjct 31927 AAGTTCGTGCTGTGCCAGGCCTGCGACAATCCAGAGAC 31964 >seq22085 Length=21336 Score = 104 bits (114), Expect = 2e-17 Identities = 118/158 (75%), Gaps = 3/158 (2%) Strand=Plus/Minus Query 6327 AAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAGCGCTTC 6386 || || || || ||||| || ||||| || |||||| || ||| |||||||||| | Sbjct 5563 AAGTACTTTGGCTGCGAGCTGGGCGCCCAAGTGCAGTTCGA---CAAGAACGAGCGCTAC 5507 Query 6387 ATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTTATTCGC 6446 ||||| |||||| ||| || | | |||||||||||| | || || ||||| ||| | Sbjct 5506 ATCGTGAACGGAAGTCATGACGCCGGCAAGCTGCAGGATCTGCTCGATGGCTTCATTAGG 5447 Query 6447 AAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484 ||||| |||||||| | || |||||||| || || || Sbjct 5446 AAGTTCGTGCTGTGCCAGGCCTGCGATAATCCCGAAAC 5409 >seq152678 Length=4630 Score = 102 bits (112), Expect = 5e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 19950 TCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGGT 20009 |||||||||||| ||||||||||||||||||||||||||||| |||||||| |||| | Sbjct 2554 TCTCTTCAAAGTGCTTTTCAACTTTCCCTCACGGTACTTGTTTGCTATCGGACTCGTGCC 2495 Query 20010 AATATTTAGCCTTA 20023 | |||||||||||| Sbjct 2494 AGTATTTAGCCTTA 2481 >seq52247 Length=4280 Score = 100 bits (110), Expect = 2e-16 Identities = 66/73 (90%), Gaps = 5/73 (7%) Strand=Plus/Plus Query 25924 TTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGCGTCACT 25978 |||||||||||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct 1954 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 2013 Query 25979 AATTAGATGACGA 25991 ||||||||||||| Sbjct 2014 AATTAGATGACGA 2026 >seq176294 Length=1487 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 38103 CGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCG 38162 |||||||||||||||||||| |||||||| || ||||| || | | || | Sbjct 1014 CGCAACACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGCTAAGAGTGCGACCA 955 Query 38163 TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTG 38222 || || | ||||||||| || || || || | || || || | ||| | || |||||| Sbjct 954 TCTTCAAGTTGTTTTCCAGCGAAGATCAGTCTCTGCTGGTCAGGGGGAATACCCTCTTTG 895 Query 38223 TCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTT---TCAACTTCTAATGTA 38279 ||| ||| ||| ||| ||||||| || || | ||||| || || || | ||| Sbjct 894 TCCTGAATCTTTGCCTTTACATTCTCGATGGTGT---CACTTGGCTCCACCTCGAGAGTA 838 Query 38280 ATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 || || || || || | ||| || ||||| |||||||| || Sbjct 837 ATGGTCTTGCCGGTTAGGGTCTTGACGAAGATCTGCATTTT 797 >seq44755 Length=507 Score = 84.2 bits (92), Expect = 1e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 ||||||| | ||| || | || | || || ||| ||||| || || ||||| || Sbjct 196 TACCACCGCGCAAGCGAAGAACAAGGTGGAGCGTGGATTCCTTCTGGATGTTGTAGTCGC 255 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 || | ||| | || || | || || ||||| || || || | || || |||| | Sbjct 256 TCAGAGTACGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCGGGAG 315 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| |||||| |||||| || || |||||| |||| || || || | |||| Sbjct 316 GGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCAA 375 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | || || || || || |||| |||||||||||| |||||||| Sbjct 376 CTTCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAGATCTGCAT 424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334178090785217