Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq172076 98.7 1e-15 seq18922 96.9 4e-15 >seq172076 Length=28491 Score = 98.7 bits (108), Expect = 1e-15 Identities = 141/199 (71%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 33043 CTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33102 ||| |||||| || || || ||||| || || || || |||||||| || || || | Sbjct 3336 CTAGATTTTCGTTGACGATGCCGTCGCTTGCCGCGAAGAACGCCAAGACGTGAGAAATGA 3395 Query 33103 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTT 33162 | | | ||||| | ||| ||| ||| | | ||||| |||| |||||||| Sbjct 3396 AGTGTCGCTCGTCATCTTTTAACGTATCCCAGTGGCCCAGGTCTTTCGATAGATCCACTT 3455 Query 33163 CTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATT 33222 | || | ||||| || || || || |||||||| ||||| | |||||||||||| |||| Sbjct 3456 CCTCTGCAGTCCAGAAAGAGGCTTCGGCCTTTTTGTACATTTGCCAGATGTCATGGTATT 3515 Query 33223 GAATTGGAAAAATAACAAA 33241 ||| ||||| | ||||| Sbjct 3516 TAATAGGAAACACCACAAA 3534 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 32357 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 32416 ||||||||||||||| |||||||| || ||||| || |||||||| || ||||| || || Sbjct 1233 CATAACTCCCATTTTCTGGTATTCGCCAACACGCTTCTCGAAAAAGTTCGTTTTGCCCTC 1292 Query 32417 TAATGATATATTTTCCATGAAATCGAATGGATT 32449 | || || ||||||||||| ||||| || || Sbjct 1293 GAGCGAAATGTTTTCCATGAAGTCGAAGGGGTT 1325 >seq18922 Length=6667 Score = 96.9 bits (106), Expect = 4e-15 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 32357 CATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTC 32416 ||||||||||||||| |||||||| || ||||| || |||||||| || ||||| || || Sbjct 4439 CATAACTCCCATTTTCTGGTATTCGCCGACACGCTTCTCGAAAAAGTTCGTTTTGCCCTC 4380 Query 32417 TAATGATATATTTTCCATGAAATCGAATGGATT 32449 | || || ||||||||||| |||||||| || Sbjct 4379 GAGCGAAATGTTTTCCATGAAGTCGAATGGGTT 4347 Score = 89.7 bits (98), Expect = 7e-13 Identities = 139/199 (70%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 33043 CTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 33102 ||| |||||| || || || ||||| || || || || |||||||| || || || | Sbjct 1325 CTAGATTTTCGTTGACGATGCCGTCGCTTGCCGCGAAGAACGCCAAGACGTGAGAAATGA 1266 Query 33103 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTT 33162 | | || || | |||| ||| ||| | | ||||| |||| |||||||| Sbjct 1265 AGTGCCGCTCCTCATCTTTTAGCGTATCCCAGTGGCCCAGGTCTTTCGATAGATCCACTT 1206 Query 33163 CTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATT 33222 | || | ||||| || || || || |||||||| ||||| | |||||||||||| |||| Sbjct 1205 CCTCTGCAGTCCAGAAAGAGGCTTCGGCCTTTTTGTACATTTGCCAGATGTCATGGTATT 1146 Query 33223 GAATTGGAAAAATAACAAA 33241 || ||||| | ||||| Sbjct 1145 TTATAGGAAACACCACAAA 1127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 632139741197200