Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq172076 127 2e-24 seq18922 123 3e-23 >seq172076 Length=28491 Score = 127 bits (140), Expect = 2e-24 Identities = 173/240 (72%), Gaps = 1/240 (0%) Strand=Plus/Plus Query 93467 AATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATA 93526 ||| ||| ||| |||||||| ||||| || || ||| ||| || || || ||||| | Sbjct 3327 AATATCT-TACTAGATTTTCGTTGACGATGCCGTCGCTTGCCGCGAAGAACGCCAAGACG 3385 Query 93527 TGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAA 93586 || || || ||| ||| |||||||| | | ||||||| | | || ||||| || Sbjct 3386 TGAGAAATGAAGTGTCGCTCGTCATCTTTTAACGTATCCCAGTGGCCCAGGTCTTTCGAT 3445 Query 93587 AGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATG 93646 ||||| ||||| || ||||||| || || ||||| || ||||||||||| | ||| ||| Sbjct 3446 AGATCCACTTCCTCTGCAGTCCAGAAAGAGGCTTCGGCCTTTTTGTACATTTGCCAGATG 3505 Query 93647 TCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTCT 93706 || || |||| ||| ||||| | ||||| || || || || || || | |||||| Sbjct 3506 TCATGGTATTTAATAGGAAACACCACAAACCGGCGGGGATTGTCCTTCAGCAGTGGCTCT 3565 >seq18922 Length=6667 Score = 123 bits (136), Expect = 3e-23 Identities = 172/240 (72%), Gaps = 1/240 (0%) Strand=Plus/Minus Query 93467 AATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATA 93526 ||| ||| ||| |||||||| ||||| || || ||| ||| || || || ||||| | Sbjct 1334 AATATCT-TACTAGATTTTCGTTGACGATGCCGTCGCTTGCCGCGAAGAACGCCAAGACG 1276 Query 93527 TGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAA 93586 || || || || ||| |||||||| ||| ||||||| | | || ||||| || Sbjct 1275 TGAGAAATGAAGTGCCGCTCCTCATCTTTTAGCGTATCCCAGTGGCCCAGGTCTTTCGAT 1216 Query 93587 AGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATG 93646 ||||| ||||| || ||||||| || || ||||| || ||||||||||| | ||| ||| Sbjct 1215 AGATCCACTTCCTCTGCAGTCCAGAAAGAGGCTTCGGCCTTTTTGTACATTTGCCAGATG 1156 Query 93647 TCTTGATATTGAATTGGAAATATGACAAAACGATTAGGGTTATCTTTTAGTAACGGCTCT 93706 || || |||| || ||||| | ||||| || || || || || || | |||||| Sbjct 1155 TCATGGTATTTTATAGGAAACACCACAAACCGGCGGGGATTGTCCTTCAGCAGTGGCTCT 1096 Score = 82.4 bits (90), Expect = 8e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 93128 ATCAACTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATT 93187 |||||||| |||||||| || | ||||| | | || || ||||||||||| || || Sbjct 2122 ATCAACTCGTTGCTGAACGTGAGCCCTGGCATGATACCGCGCTTCTTGAGCCAGAAGATG 2063 Query 93188 GAAGCAAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCG 93247 | || || || || ||||| || ||||| ||||| || || || | | || ||| Sbjct 2062 GCGGCGAATGAGCCCGAGAAAAAGATGCCTTCGACGGCAGCGAACGCGATCACTCGCTCG 2003 Query 93248 GCAAAATTTGCGGAATTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATA 93307 || || | || | | | ||||||| || | ||||| || || || ||||| Sbjct 2002 GCGAACGAAGAGGCGTCATCGTTGATCCACTTGATGGCCCAGTCCGCCTTCCGCTTAACG 1943 Query 93308 CAAGGTAGTGTTTCGATAGCGTTAAATAGGTAATC 93342 || || | |||||||| ||||| || ||||| || Sbjct 1942 CAGGGCATGGTTTCGATGGCGTTGAAGAGGTATTC 1908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 555549344090680