Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq177713 84.2 2e-11 >seq177713 Length=14691 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||| || || |||| ||||| ||||| ||| ||||| || |||||| Sbjct 90 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTTGAGCCCAGC 149 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | | | | || ||| || || ||||| |||||| | || ||| || Sbjct 150 GACACGATCGAAAACGTGAAAGCCAAGATCCAGGACAAGGAAGGCATCCCTCCCGACCAG 209 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||||| || | || |||||||| |||| ||| | ||| || ||| || || Sbjct 210 CAGAGGCTGATCTTCGCCGGCAAACAGCTGGAGGATGGTCGTACTCTGAGCGACTACAAC 269 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111415 || || || ||||| || || || | ||| | || |||||||||||| Sbjct 270 ATCCAGAAGGAATCCACGCTCCACCTTGTGCTTCGCTTGCGCGGTGGCA 318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422068611189400