Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq176294 93.3 3e-14 seq159113 87.8 1e-12 >seq176294 Length=1487 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 21831 AAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCC 21890 |||||||| || || | || || |||| ||||| |||||||| | || ||| | Sbjct 797 AAAATGCAGATCTTCGTCAAGACCCTAACCGGCAAGACCATTACTCTCGAGGTGGAGCCA 856 Query 21891 GCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAAC 21950 || || | | || | ||| ||| ||| || ||||||||| | || || Sbjct 857 AGTGACACCATCGAGAATGTAAAGGCAAAGATTCAGGACAAAGAGGGTATTCCCCCTGAC 916 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || |||||||| ||||| ||||| |||||||| |||||| ||| | ||| ||| Sbjct 917 CAGCAGAGACTGATCTTCGCTGGAAAACAACTTGAAGATGGTCGCACTCTTAGCGACTAC 976 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 || || || |||||||||||||||||| |||| || || | || || ||| Sbjct 977 AACATCCAAAAGGAATCTACTCTTCATTTGGTGTTGCGCCTTCGTGGTGGA 1027 >seq159113 Length=23055 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 21831 AAAATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCC 21890 |||||||| || || | || || | || ||||| |||||||| | || ||| | Sbjct 22081 AAAATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATTACTCTCGAGGTGGAGCCA 22140 Query 21891 GCAGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAAC 21950 || || | | || | ||| ||| ||| || ||||||||| | || || Sbjct 22141 AGTGACACAATCGAGAATGTAAAGGCAAAGATTCAGGACAAAGAGGGTATTCCCCCTGAC 22200 Query 21951 CAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTAC 22010 || ||||| || ||||| ||||| |||||||| |||||| ||| | ||| ||| Sbjct 22201 CAGCAGAGGCTAATCTTCGCTGGAAAACAACTTGAAGATGGTCGCACTCTTAGCGACTAC 22260 Query 22011 AATATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 ||||| || |||||||||||||||||| |||| || || | || || ||| Sbjct 22261 AATATCCAAAAGGAATCTACTCTTCATTTGGTGTTGCGCCTTCGTGGTGGA 22311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357302470141078