Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11]
188,407 sequences; 1,026,046,400 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq176294 145 6e-30
seq159113 140 3e-28
seq88483 123 2e-23
seq26467 111 1e-19
seq94379 95.1 1e-14
seq166919 91.5 1e-13
>seq176294
Length=1487
Score = 145 bits (160), Expect = 6e-30
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || ||||| || | ||| || ||||| | |||||||| ||||| |||||||| |||
Sbjct 1029 ATTCCACCACGAAGGCGCAACACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAGTCG 970
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| | ||| ||| ||||||||||||||| |||||| |||| || | ||| ||||| ||
Sbjct 969 CTAAGAGTGCGACCATCTTCAAGTTGTTTTCCAGCGAAGATCAGTCTCTGCTGGTCAGGG 910
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| || |||||||| ||||||| |||| | || | |||||| | | ||
Sbjct 909 GGAATACCCTCTTTGTCCTGAATCTTTGCCTTTACATTCTCGATGGTGTCACTTGGCTCC 850
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | || | || |||||||| || || || || || ||||||||
Sbjct 849 ACCTCGAGAGTAATGGTCTTGCCGGTTAGGGTCTTGACGAAGATCTGCAT 800
>seq159113
Length=23055
Score = 140 bits (154), Expect = 3e-28
Identities = 169/230 (73%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
|| || ||||| || | ||| || ||||| | |||||||| ||||| || ||||| |||
Sbjct 22313 ATTCCACCACGAAGGCGCAACACCAAATGAAGAGTAGATTCCTTTTGGATATTGTAGTCG 22254
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|| | ||| ||| ||||||||||||||| |||||| |||| || | ||| ||||| ||
Sbjct 22253 CTAAGAGTGCGACCATCTTCAAGTTGTTTTCCAGCGAAGATTAGCCTCTGCTGGTCAGGG 22194
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
||||| || |||||||| ||||||| |||| | || | ||||| | | ||
Sbjct 22193 GGAATACCCTCTTTGTCCTGAATCTTTGCCTTTACATTCTCGATTGTGTCACTTGGCTCC 22134
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | || | || ||||||||||| || || || || ||||||||
Sbjct 22133 ACCTCGAGAGTAATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 22084
Score = 113 bits (124), Expect = 4e-20
Identities = 163/230 (71%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | || || | || | || |||||||| || |||||||| |||
Sbjct 23016 ATACCACCACGCAGACGCAGGACCAGGTGAAGAGTGGATTCTTTCTGGATGTTGTAGTCG 22957
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|||| ||||| ||| || || ||||| || ||| |||| || | ||| ||||| ||
Sbjct 22956 CTCAGGGTACGTCCATCCTCCAGCTGTTTGCCGGCGAAGATAAGCCTCTGCTGGTCTGGG 22897
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|||||||| |||||||| || || ||| | | ||| | ||||| | | ||
Sbjct 22896 GGAATGCCCTCTTTGTCCTGGATTTTGGCTTTGACGTTTTCGATCGTGTCACTTGGCTCA 22837
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | ||| | |||||||| || || || || || |||||||||||
Sbjct 22836 ACTTCGAGGGTGATAGTTTTGCCAGTGAGGGTCTTCACGAAAATCTGCAT 22787
>seq88483
Length=20907
Score = 123 bits (136), Expect = 2e-23
Identities = 166/231 (72%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| || || || | | || ||||| | ||||| || || || |||||||| |||
Sbjct 418 ATACCACCGCGCAGGCGAAGGACCAAATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCG 477
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|||| ||||||| ||| || || ||||| || ||| |||| || | ||| ||||| |||
Sbjct 478 CTCAGAGTACGACCATCCTCCAGCTGTTTGCCGGCGAAGATCAGCCTCTGCTGGTCGGGA 537
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || ||||| ||||| ||||| || | | ||| | ||| || ||| ||||
Sbjct 538 GGGATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCGATGGTATCACTGGGTTCG 597
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383
|| || | || | || || || || || ||||| |||||||||||||||
Sbjct 598 ACCTCGAGTGTGATAGTCTTTCCAGTAAGTGTTTTCACAAAAATCTGCATG 648
>seq26467
Length=1226
Score = 111 bits (122), Expect = 1e-19
Identities = 163/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| || || || | | || ||||| | ||||| || || || |||||||| |||
Sbjct 813 ATACCACCGCGCAGGCGAAGGACCAAATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCG 754
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|||| ||||||| || || || ||||| || ||| | || || | ||| ||||| |||
Sbjct 753 CTCAGAGTACGACCGTCCTCCAGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCGGGA 694
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|| || ||||| ||||| ||||| || | | || | ||| || ||| ||||
Sbjct 693 GGGATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGTTCG 634
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383
|| || | || | || || || || || ||||| |||||||||||||||
Sbjct 633 ACCTCGAGTGTGATAGTCTTTCCAGTAAGTGTTTTCACAAAAATCTGCATG 583
>seq94379
Length=7077
Score = 95.1 bits (104), Expect = 1e-14
Identities = 84/105 (80%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 114185 CGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACC 114244
||| ||||| || || |||||||| ||||||| |||||| ||| || || ||||| ||
Sbjct 6938 CGTGGATTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCATCCTCCAGCTGTTTGCC 6997
Query 114245 AGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTC 114289
||| |||| || | ||| ||||| |||||||||||||| |||||
Sbjct 6998 GGCGAAGATCAGCCTCTGCTGGTCGGGAGGAATGCCTTCCTTGTC 7042
>seq166919
Length=61529
Score = 91.5 bits (100), Expect = 1e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212
||||| ||||| || | | || | || | || |||||||| || |||||| | | |
Sbjct 59178 ATACCACCACGCAGACGAAGGACCAGGTGAAGGGTGGATTCTTTCTGGATGTTGAAGTAG 59119
Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272
|||| ||||| |||||| || ||||| || ||| |||| || | ||| || || ||
Sbjct 59118 CTCAGGGTACGTCCATCTTCCAGCTGTTTGCCGGCGAAGATAAGCCTCTGCTGATCTGGG 59059
Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332
|||||||| ||| |||| || || ||| | | || | ||||| | | ||
Sbjct 59058 GGAATGCCCTCTCTGTCCTGGATTTTGGCTTTGACGTTCTCGATCGTGTCACTTGGCTCA 58999
Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| || | || | |||||||| || || || ||||| |||||||||||
Sbjct 58998 ACTTCAAGAGTGATAGTTTTGCCAGTGAGGGTCTTTACGAAAATCTGCAT 58949
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419169683058084
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |