Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq18922 154 3e-32 seq172076 150 3e-31 seq60558 122 2e-22 seq44860 120 6e-22 seq179804 96.9 7e-15 >seq18922 Length=6667 Score = 154 bits (170), Expect = 3e-32 Identities = 170/224 (76%), Gaps = 2/224 (1%) Strand=Plus/Plus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 || ||||| ||||| || || ||||||||| | ||| ||||||||||||||| |||| Sbjct 1914 CTCTTCAACGCCATCGAAACCATGCCCTGCGTTAAGCGGAAGGCGGACTGGGCCATCAAG 1973 Query 42669 TGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728 |||||| | | || | | |||||| |||| | || | || || | |||||||| Sbjct 1974 TGGATCAACGATGACGCCTCTTCGTTCGCCGAGCGAGTGATCGCGTTCGCTGCCGTCGAA 2033 Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGAT 42787 |||||||| ||||||||| | |||||| ||||||||||||||||| || ||| || || Sbjct 2034 GGCATCTTTTTCTCGGGCTCATTCGCCGCCATCTTCTGGCTCAAGAAGCGCGGTATC-AT 2092 Query 42788 GCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 ||| || ||||| ||| ||||| | ||||| ||||| |||| Sbjct 2093 GCCAGGGCTCACGTTCAGCAACGAGTTGATCAGTAGGGATGAGG 2136 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 ||| |||||||| ||||| ||||| ||| | |||||||| || ||||||||||||||||| Sbjct 4349 CCCATTCGACTTCATGGAAAACATTTCGCTCGAGGGCAAAACGAACTTTTTCGAGAAGCG 4408 Query 43130 CGTCGCCGACTACCAG 43145 |||| ||| |||||| Sbjct 4409 TGTCGGCGAATACCAG 4424 >seq172076 Length=28491 Score = 150 bits (166), Expect = 3e-31 Identities = 173/228 (76%), Gaps = 10/228 (4%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 || ||||| ||||| || || ||||||||| ||||| ||||||||||||||| |||| Sbjct 2588 CTCTTCAACGCCATCGAAACTATGCCCTGCGTCAAGCGGAAGGCGGACTGGGCCATCAAG 2529 Query 42669 TGGATCGA-GAGTCCCGACGCAAC---GTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGT 42724 |||||| | || |||||| | ||||| |||| | || | || || | ||||| Sbjct 2528 TGGATCAACGA----CGACGCCTCTTCGTTCGCCGAGCGAGTGATCGCGTTCGCTGCCGT 2473 Query 42725 CGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAA-GGTGT 42783 ||| |||||||| ||||||||| | || ||| |||| |||||||||||| || ||| | Sbjct 2472 CGAAGGCATCTTTTTCTCGGGCTCGTTTGCCGCCATTTTCTGGCTCAAGAAGCGTGGTAT 2413 Query 42784 CGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 | ||||| || ||||| ||| ||||| | ||||||||||| |||| Sbjct 2412 C-ATGCCAGGGCTCACGTTCAGCAACGAGTTGATCAGCAGGGATGAGG 2366 Score = 87.8 bits (96), Expect = 3e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||||||||| ||||| ||||| ||| | |||||||| || ||||||||||||||||| Sbjct 1323 CCCCTTCGACTTCATGGAAAACATTTCGCTCGAGGGCAAAACGAACTTTTTCGAGAAGCG 1264 Query 43130 CGTCGCCGACTACCAG 43145 || | ||| |||||| Sbjct 1263 TGTTGGCGAATACCAG 1248 >seq60558 Length=5495 Score = 122 bits (134), Expect = 2e-22 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 |||||| || | || | |||| |||||||| ||||| ||||| |||||||||||||| Sbjct 3777 CACCTCATCGGGACTGCTATACTCCACAATCTCCGTGCACAGGTTGCTGCACTTGATGGT 3718 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCC 244824 ||||| || ||| || ||| ||| |||||||||||||||||| ||||| ||||| Sbjct 3717 GCCCAAGTTCTGTTGGTTGCTCTTCCGGTTGCAGGCGTCCTTGTACAGCATATAGGGCGT 3658 Query 244825 CCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCT 244884 || || || | ||||| ||| || | || ||| || | | || |||| |||| | Sbjct 3657 GCCTGTTTCTACTTGGGCCTCGATGATGGCGTACCACAGCTTCTGTGCTTTGATCGTCTT 3598 Query 244885 GCGAGCCTTGCCCTC 244899 ||| | |||||||| Sbjct 3597 GCGGCCTTTGCCCTC 3583 Score = 120 bits (132), Expect = 6e-22 Identities = 159/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 244937 CCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATGAGACTCCACTCGCCGCCG 244996 ||||| || || || || || || ||| |||||| |||||||| ||||||||||| Sbjct 2355 CCCCACACATCATCGAGCCCTGGACACTCCGCCGGACACATGAGCGTCCACTCGCCGTTC 2296 Query 244997 TCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTC 245056 ||| || | || ||||||||| || |||||||||| || | ||||| || | | Sbjct 2295 GCCTCAACGCGCTTCATGAAGAGATCCGGGATCCAGACCGCATAAAAGAGATCACGTGCT 2236 Query 245057 CTCTGCTCGTCCGAGCCAGTGTTCTT-CCTCAGCTCCAAAAAGTCAAAGACGTCGACGTG 245115 | |||||| ||| ||| |||||||| | ||| || | || ||||||| |||| |||| Sbjct 2235 CGCTGCTCCTCCTTGCCGGTGTTCTTGCGGCAG-TCGAGGAAATCAAAGATGTCGGCGTG 2177 Query 245116 CCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCT 245153 ||| ||||| | ||||| || | ||||| || |||| Sbjct 2176 CCATGGCTCGAGGTAGATGGCAAACGCGCCTGGTCGCT 2139 >seq44860 Length=53707 Score = 120 bits (132), Expect = 6e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 |||||| || | || | |||| |||||||| ||||| | ||| |||||||||||||| Sbjct 4490 CACCTCATCGGGACTGCTATACTCCACAATCTCCGTGCACAAGTTGCTGCACTTGATGGT 4431 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCC 244824 ||||| || ||| || ||| ||| ||||||||||||||||||||||||| |||| Sbjct 4430 GCCCAAGTTCTGTTGGTTGCTCTTCCGGTTGCAGGCGTCCTTGTAGAGCATGTAGGGAGT 4371 Query 244825 CCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCT 244884 |||||||||| || || ||| | | | ||| || | | || |||| ||| | Sbjct 4370 TCCGGTCTCGACTTGCGCCTCGATAATGGCATACCACAGCTTCTGTGCTTTGATTGTCTT 4311 Query 244885 GCGAGCCTTGCCCTCTGCCTCGTA 244908 |||| | ||||| || | ||||| Sbjct 4310 GCGACCTTTGCCTTCAGATTCGTA 4287 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 |||||||||||||| ||||| ||||| ||| |||| |||||| || |||||||| Sbjct 6288 ACCTGAAACTCTCCAGACAGGACGCGACGCGTATAGATGTTGCTCGTGTATGGCTCGATT 6229 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 || ||||||| || ||||||||||| ||||| |||||||| | | |||||| Sbjct 6228 GATTCGTTGTTGCCAAGAATCTGCGCCGTCGAGGCAGTGGGCATGGGAGCGAGAAGCAGA 6169 Query 244217 CTGTTCCTCACGCCGTGCCT 244236 ||||| | || |||| ||| Sbjct 6168 CTGTTGCGTACACCGTACCT 6149 >seq179804 Length=4616 Score = 96.9 bits (106), Expect = 7e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 244097 ACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTCGATG 244156 |||||||||||||| ||||||||||| ||| |||| |||||| || |||||||| Sbjct 3621 ACCTGAAACTCTCCAGACAGCACGCGACGCGTATAGATGTTGCTCGTGTATGGCTCGATT 3680 Query 244157 CTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCAGCAGA 244216 || ||||||| || ||||| || || || || |||||||| | | ||||||| Sbjct 3681 GATTCGTTGTTGCCAAGAATCTGTGCTGTCGAGGCTGTGGGCATGGGGGCAAGCAGCAGA 3740 Query 244217 CTGTTCCTCACGCCGTGCCTCTG 244239 ||||| | ||| |||| ||| || Sbjct 3741 CTGTTGCGCACACCGTACCTATG 3763 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 942115198554320