Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq26467 109 4e-19 seq88483 104 2e-17 seq177713 100 2e-16 seq44755 87.8 1e-12 >seq26467 Length=1226 Score = 109 bits (120), Expect = 4e-19 Identities = 164/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | || ||||| || ||||| || || || |||||||| ||||| Sbjct 810 CCACCGCGCAGGCGAAGGACCAAATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 751 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | |||| || | |||||||| ||| |||||| | ||| |||||| || Sbjct 750 AGAGTACGACCGTCCTCCAGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCGGGAGGG 691 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || ||| || ||| | || || ||||| || ||| || Sbjct 690 ATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTATCACTGGGTTCGACC 631 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT-ATTT 15180 || | || || || || || || || ||||| |||||||| ||||| |||| Sbjct 630 TCGAGTGTGATAGTCTTTCCAGTAAGTGTTTTCACAAAAATCTGCATGATTT 579 >seq88483 Length=20907 Score = 104 bits (114), Expect = 2e-17 Identities = 163/232 (70%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| |||| | | || ||||| || ||||| || || || |||||||| ||||| Sbjct 421 CCACCGCGCAGGCGAAGGACCAAATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTC 480 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | || || | |||||||| ||| | |||| | ||| |||||| || Sbjct 481 AGAGTACGACCATCCTCCAGCTGTTTGCCGGCGAAGATCAGCCTCTGCTGGTCGGGAGGG 540 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || ||| || ||| |||| || ||||| || ||| || Sbjct 541 ATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCGATGGTATCACTGGGTTCGACC 600 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT-ATTT 15180 || | || || || || || || || ||||| |||||||| ||||| |||| Sbjct 601 TCGAGTGTGATAGTCTTTCCAGTAAGTGTTTTCACAAAAATCTGCATGATTT 652 >seq177713 Length=14691 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| ||||| | | || | || || || || || || || |||||||| |||| Sbjct 318 TGCCACCGCGCAAGCGAAGCACAAGGTGGAGCGTGGATTCCTTCTGGATGTTGTAGTCGC 259 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 | ||| | | | || || | |||||||| ||| | |||| | ||| |||||| | Sbjct 258 TCAGAGTACGACCATCCTCCAGCTGTTTGCCGGCGAAGATCAGCCTCTGCTGGTCGGGAG 199 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | || ||||||||||| || ||| ||| || |||| || || ||||| || | Sbjct 198 GGATGCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTTTCGATCGTGTCGCTGGGCTCAA 139 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 | || | ||| ||||| || || ||||| || || ||||| || |||||| Sbjct 138 CTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCATA 89 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| ||||| | | || | || || || || ||||| || |||||||| ||||| Sbjct 1783 CCACCGCGCAAGCGAAGCACAAGGTGGAGCGTGGATTCTTTCTGGATGTTGTAGTCGCTC 1724 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | || || | |||||||||||| | |||| | ||| |||||| || Sbjct 1723 AGAGTACGGCCATCCTCCAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGAGGG 1664 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || ||| || || | || || || ||||| || || Sbjct 1663 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTTGGCTCAACT 1604 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||| ||||| || || ||||| || || || || || |||||| Sbjct 1603 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATA 1556 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| ||||| | | || | || || ||||| || || || |||||||| ||||| Sbjct 1555 CCACCGCGCAAGCGAAGCACAAGGTGGAGCGTAGATTCCTTCTGGATGTTGTAGTCGCTC 1496 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | || || | |||||||| ||| | |||| | ||| |||||| || Sbjct 1495 AGAGTACGGCCATCCTCCAGCTGTTTGCCGGCGAAGATCAGCCTCTGCTGGTCGGGAGGG 1436 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || ||| || || | || || || ||||| || || Sbjct 1435 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTTGGCTCAACT 1376 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||| ||||| || || ||||| || || || || || |||||| Sbjct 1375 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATA 1328 >seq44755 Length=507 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| ||||| | | ||| | || || || || || || || |||||||| ||||| Sbjct 198 CCACCGCGCAAGCGAAGAACAAGGTGGAGCGTGGATTCCTTCTGGATGTTGTAGTCGCTC 257 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 ||| | | | || || | || ||||| ||| | |||| | ||| |||||| || Sbjct 258 AGAGTACGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCGGGAGGG 317 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 || ||||||||||| || ||| || || | || || || ||||| || || Sbjct 318 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCAACT 377 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || | ||| ||||| || || ||||| ||||| || || || |||||| Sbjct 378 TCCAGGGTGATGGTCTTGCCAGTCAGGGTTTTCACGAAGATCTGCATA 425 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356571352803995