Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq176294 127 2e-24 seq159113 113 4e-20 seq44860 104 2e-17 seq60558 89.7 5e-13 >seq176294 Length=1487 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || || | |||||| | ||| || || |||||||||||||| || || ||| Sbjct 1029 ATTCCACCACGAAGGCGCAACACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAGTCG 970 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | || | ||| || | ||||||||| ||| | |||| || |||||||| || Sbjct 969 CTAAGAGTGCGACCATCTTCAAGTTGTTTTCCAGCGAAGATCAGTCTCTGCTGGTCAGGG 910 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || ||||| || ||||| ||| || | || | |||||| | ||| Sbjct 909 GGAATACCCTCTTTGTCCTGAATCTTTGCCTTTACATTCTCGATGGTGTCACTTGGCTCC 850 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || |||||||||| || ||||||||||| || || || || || ||||| Sbjct 849 ACCTCGAGAGTAATGGTCTTGCCGGTTAGGGTCTTGACGAAGATCTGCAT 800 >seq159113 Length=23055 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || || || | |||||| | ||| || || ||||||||||||||||| || ||| Sbjct 22313 ATTCCACCACGAAGGCGCAACACCAAATGAAGAGTAGATTCCTTTTGGATATTGTAGTCG 22254 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || | || | ||| || | ||||||||| ||| | || | | |||||||| || Sbjct 22253 CTAAGAGTGCGACCATCTTCAAGTTGTTTTCCAGCGAAGATTAGCCTCTGCTGGTCAGGG 22194 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| || ||||| || ||||| ||| || | || | ||||| | ||| Sbjct 22193 GGAATACCCTCTTTGTCCTGAATCTTTGCCTTTACATTCTCGATTGTGTCACTTGGCTCC 22134 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || |||||||||| || |||||||| || || || || || || ||||| Sbjct 22133 ACCTCGAGAGTAATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 22084 >seq44860 Length=53707 Score = 104 bits (114), Expect = 2e-17 Identities = 111/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 123588 ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAAC 123647 |||||||| | |||||||| |||||||| || |||||||||||||| |||||||||||| Sbjct 4344 ATTATCGAGGCGCAAGTCGAGACCGGAACTCCCTACATGCTCTACAAGGACGCCTGCAAC 4403 Query 123648 AGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATT 123707 |||| | ||| || |||||||| || || || || || || | ||| | || ||| Sbjct 4404 CGGAAGAGCAACCAACAGAACTTGGGCACCATCAAGTGCAGCAACTTGTGCACGGAGATT 4463 Query 123708 ATCGAATACAGCGATGCCGATCAAGTG 123734 | || || ||| | ||||| | ||| Sbjct 4464 GTGGAGTATAGCAGTCCCGATGAGGTG 4490 >seq60558 Length=5495 Score = 89.7 bits (98), Expect = 5e-13 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Plus Query 123588 ATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAAC 123647 || ||||| | ||||| ||||| || ||||| || ||||| ||||| |||||||||||| Sbjct 3631 ATCATCGAGGCCCAAGTAGAAACAGGCACGCCCTATATGCTGTACAAGGACGCCTGCAAC 3690 Query 123648 AGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATT 123707 |||| | ||| || |||||||| || || || || || || || ||| | || ||| Sbjct 3691 CGGAAGAGCAACCAACAGAACTTGGGCACCATCAAGTGCAGCAACCTGTGCACGGAGATT 3750 Query 123708 ATCGAATACAGCGATGCCGATCAAGTG 123734 | || || ||| | ||||| | ||| Sbjct 3751 GTGGAGTATAGCAGTCCCGATGAGGTG 3777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450938692913720