Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq179804 107 3e-18 seq44860 98.7 2e-15 >seq179804 Length=4616 Score = 107 bits (118), Expect = 3e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 203913 TCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAA 203972 ||| |||| || | | ||||||| || ||||| | |||||| ||||| ||||||| Sbjct 2724 TCTTCCACGCGAAGAAGTGCATGCTAGTGAGTTTTCCATAGTTGGGCTCGGCGATGTGAA 2783 Query 203973 TGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAATGG 204032 |||| || |||||||| || || ||| | ||||| || || ||||| || || |||| Sbjct 2784 TGTTAAGCGACTGGCTCTGATCAATGTACACGGCCCGGTCGGCCGCCATCTTAATGATGG 2843 Query 204033 TCTTCTGCGAAATCTCCCACACCGTCTTG 204061 |||| || |||||||||||||| || ||| Sbjct 2844 TCTTTTGTGAAATCTCCCACACAGTTTTG 2872 Score = 100 bits (110), Expect = 5e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 |||||| ||||| |||||||| | || || | | |||| | ||| |||| |||| | Sbjct 3623 CTGAAACTCTCCAGACAGCACGCGACGCGTATAGATGTTGCTCGTGTATGGCTCGATTGA 3682 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 ||||||||||| | |||||| || || ||| ||||||||||| || || ||||| Sbjct 3683 TTCGTTGTTGCCAAGAATCTGTGCTGTCGAGGCTGTGGGCATGGGGGCAAGCAGCAGACT 3742 Query 204316 GTTGCGCACACCGTA 204330 ||||||||||||||| Sbjct 3743 GTTGCGCACACCGTA 3757 >seq44860 Length=53707 Score = 98.7 bits (108), Expect = 2e-15 Identities = 111/149 (74%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 203913 TCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATGTGAA 203972 ||| |||| || | | ||||||| | || ||||| |||||| ||||| ||||||| Sbjct 7192 TCTTCCACGCGAAGAAGTGCATGCTCGTCAATTTGCCGTAGTTGGGCTCGGCAATGTGAA 7133 Query 203973 TGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATAATGG 204032 | || || ||||| || || || ||| | ||||| || || ||||| || || |||| Sbjct 7132 TATTGAGCGACTGACTCTGATCAATGTACACGGCCCGGTCGGCCGCCATCTTAATGATGG 7073 Query 204033 TCTTCTGCGAAATCTCCCACACCGTCTTG 204061 |||| || |||||||||||||| || ||| Sbjct 7072 TCTTTTGTGAAATCTCCCACACAGTTTTG 7044 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 204196 CTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGC 204255 |||||| ||||| ||||| || | || || | | |||| | ||| |||| |||| | Sbjct 6286 CTGAAACTCTCCAGACAGGACGCGACGCGTATAGATGTTGCTCGTGTATGGCTCGATTGA 6227 Query 204256 CTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGA 204315 ||||||||||| | |||||| || || ||| |||||||||||||| || ||||| Sbjct 6226 TTCGTTGTTGCCAAGAATCTGCGCCGTCGAGGCAGTGGGCATGGGAGCGAGAAGCAGACT 6167 Query 204316 GTTGCGCACACCGTA 204330 |||||| |||||||| Sbjct 6166 GTTGCGTACACCGTA 6152 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 793282539927920