Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq159113 136 3e-27 seq177713 109 4e-19 seq166919 100 2e-16 seq176294 87.8 1e-12 seq44755 84.2 1e-11 >seq159113 Length=23055 Score = 136 bits (150), Expect = 3e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| ||| ||||||||| ||||| ||||| ||| | ||| |||| ||| Sbjct 22995 ACCAGGTGAAGAGTGGATTCTTTCTGGATGTTGTAGTCGCTCAGGGTACGTCCATCCTCC 22936 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| ||||| || || || | ||||||||| | || | ||||| ||||| Sbjct 22935 AGCTGTTTGCCGGCGAAGATAAGCCTCTGCTGGTCTGGGGGAATGCCCTCTTTGTCCTGG 22876 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || ||||||| | | |||| |||| | |||||| |||| ||| || ||||| Sbjct 22875 ATTTTGGCTTTGACGTTTTCGATCGTGTCACTTGGCTCAACTTCGAGGGTGATAGTTTTG 22816 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||| |||||||| || ||||||||| Sbjct 22815 CCAGTGAGGGTCTTCACGAAAATCTGCATA 22786 Score = 104 bits (114), Expect = 2e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| |||| ||| ||||||||| ||||| ||||| ||| | ||| |||| ||| Sbjct 22767 ACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAGTCACTCAGGGTACGTCCATCCTCC 22708 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| ||||| || || || | ||||||||| | || | ||||| ||||| Sbjct 22707 AGCTGTTTGCCGGCGAAGATAAGCCTCTGCTGGTCTGGGGGAATGCCCTCTTTGTCCTGG 22648 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || ||||||| | | |||| |||| | |||||| |||| ||| || |||||| Sbjct 22647 ATTTTGGCTTTGACGTTTTCGATCGTGTCACTTGGCTCAACTTCGAGGGTGATCGTTTTT 22588 Query 34953 CC 34954 || Sbjct 22587 CC 22586 Score = 84.2 bits (92), Expect = 1e-11 Identities = 151/219 (69%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| ||||| |||| || ||| || || || || ||||| ||| | || |||| Sbjct 22296 CAACACCAAATGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTAAGAGTGCGACCATC 22237 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || || |||||||| || || ||||| | |||||||| | || | ||||| ||||| Sbjct 22236 TTCAAGTTGTTTTCCAGCGAAGATTAGCCTCTGCTGGTCAGGGGGAATACCCTCTTTGTC 22177 Query 34889 GCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 |||||| || || || || || | |||| | ||| || |||| || ||| Sbjct 22176 CTGAATCTTTGCCTTTAC--ATTCTCGATTGTGTCACTTGGCTCCACCTCGAGAGTAATG 22119 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTC 34985 || || || || || ||||| || ||||||||||| ||| Sbjct 22118 GTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATTTTC 22080 >seq177713 Length=14691 Score = 109 bits (120), Expect = 4e-19 Identities = 140/193 (73%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || | || |||| ||||||||||| ||||| || Sbjct 281 TTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGACCATCCTCCAGCTGTTTGCCGGCGAA 222 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | |||||||| | || | || |||||||| ||||| ||| ||| Sbjct 221 GATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCTTTCACGTT 162 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | | |||| || | || |||||| || | ||| ||||| || || || || |||||||| Sbjct 161 TTCGATCGTGTCGCTGGGCTCAACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 102 Query 34970 AAAGATCTGCATA 34982 ||||||||||||| Sbjct 101 AAAGATCTGCATA 89 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || | || |||| ||||||||||| ||||| || Sbjct 1520 TTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCATCCTCCAGCTGTTTGCCGGCGAA 1461 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | |||||||| | || | || |||||||| ||||| || ||| Sbjct 1460 GATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTT 1401 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | |||| || | | |||||| || | ||| ||||| || || || || |||||||| Sbjct 1400 CTCGATCGTGTCGCTTGGCTCAACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 1341 Query 34970 AAAGATCTGCATA 34982 |||||||||||| Sbjct 1340 GAAGATCTGCATA 1328 Score = 91.5 bits (100), Expect = 1e-13 Identities = 136/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||||||||| ||||| ||||| || | || |||| ||||||||||| || || || Sbjct 1748 TTCTTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCATCCTCCAGCTGTTTGCCAGCGAA 1689 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | |||||||| | || | || |||||||| ||||| || ||| Sbjct 1688 GATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTT 1629 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | |||| || | | |||||| || | ||| ||||| || || || || |||||||| Sbjct 1628 CTCGATCGTGTCGCTTGGCTCAACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 1569 Query 34970 AAAGATCTGCATA 34982 |||||||||||| Sbjct 1568 GAAGATCTGCATA 1556 >seq166919 Length=61529 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||||| ||| ||||||||| ||||| ||| ||| | ||| |||| ||| Sbjct 59157 ACCAGGTGAAGGGTGGATTCTTTCTGGATGTTGAAGTAGCTCAGGGTACGTCCATCTTCC 59098 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| ||||| || || || | ||||| ||| | || | ||||| |||| Sbjct 59097 AGCTGTTTGCCGGCGAAGATAAGCCTCTGCTGATCTGGGGGAATGCCCTCTCTGTCCTGG 59038 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 || || ||||||| | |||| |||| | |||||| || | || || ||||| Sbjct 59037 ATTTTGGCTTTGACGTTCTCGATCGTGTCACTTGGCTCAACTTCAAGAGTGATAGTTTTG 58978 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||| ||||| || || ||||||||| Sbjct 58977 CCAGTGAGGGTCTTTACGAAAATCTGCATA 58948 >seq176294 Length=1487 Score = 87.8 bits (96), Expect = 1e-12 Identities = 152/219 (69%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| ||||| |||| || ||| || || ||||| ||||| ||| | || |||| Sbjct 1012 CAACACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGCTAAGAGTGCGACCATC 953 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || || |||||||| || || || |||| |||||||| | || | ||||| ||||| Sbjct 952 TTCAAGTTGTTTTCCAGCGAAGATCAGTCTCTGCTGGTCAGGGGGAATACCCTCTTTGTC 893 Query 34889 GCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 |||||| || || || || || | |||| | ||| || |||| || ||| Sbjct 892 CTGAATCTTTGCCTTTAC--ATTCTCGATGGTGTCACTTGGCTCCACCTCGAGAGTAATG 835 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTC 34985 || || || || || ||||| || ||||||||||| ||| Sbjct 834 GTCTTGCCGGTTAGGGTCTTGACGAAGATCTGCATTTTC 796 >seq44755 Length=507 Score = 84.2 bits (92), Expect = 1e-11 Identities = 145/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||| | ||| | ||| ||| ||||| ||||| ||||| || | || |||| || Sbjct 215 AACAAGGTGGAGCGTGGATTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGACCATCCTC 274 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 |||||| || ||||| || || || | |||||||| | || | || |||||||| Sbjct 275 CAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTGTCCTG 334 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| || ||| | || | || | || |||||| || | ||| ||||| || Sbjct 335 GATCTTGGCCTTCACGTTCTCGATGGTGTCGCTGGGCTCAACTTCCAGGGTGATGGTCTT 394 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || || ||||| |||||||||||| Sbjct 395 GCCAGTCAGGGTTTTCACGAAGATCTGCATA 425 Score = 82.4 bits (90), Expect = 5e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| || | || |||| ||||||||||| || || || Sbjct 5 TTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGGCCATCCTCCAGCTGTTTGCCAGCGAA 64 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | |||||||| | || | || ||||| || ||||| || ||| Sbjct 65 GATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCCTTATCCTGGATCTTGGCCTTCACGTT 124 Query 34910 TGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCAC 34969 | |||| || | | |||||| || | ||| ||||| || || || || |||||||| Sbjct 125 CTCGATCGTGTCGCTTGGCTCAACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 184 Query 34970 AAAGATCTGCATA 34982 |||||||||||| Sbjct 185 GAAGATCTGCATA 197 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323888172979896