Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq183125 89.7 4e-13 seq147173 89.7 4e-13 >seq183125 Length=18962 Score = 89.7 bits (98), Expect = 4e-13 Identities = 125/173 (72%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 30041 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGG-TTGTTCCTGATGAGG 30099 |||| || ||||| ||||||| |||||| || | | | |||| || || |||| Sbjct 5734 CTTTCGGATTCCACGCGCACATGATGATACGGC-GACAGTTGGGATTCGTCTTGATCGTC 5792 Query 30100 TCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTG 30159 || | | | || ||||||||||| || ||| |||| |||||| || |||||| || Sbjct 5793 TCGATGACATTATGCAGCTGATCGACGCCCTGTCCCGTGTAGTCCGCGTGCATGTCTTTG 5852 Query 30160 TACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCC 30212 ||||| || || || || | ||||||||| ||||| || || || ||||| || Sbjct 5853 TACTCGGCGCCAAAGTGACGCCACTGGAAGCCGTAGACGGGGCCAAGGTCACC 5905 >seq147173 Length=25037 Score = 89.7 bits (98), Expect = 4e-13 Identities = 125/173 (72%), Gaps = 2/173 (1%) Strand=Plus/Minus Query 30041 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGG-TTGTTCCTGATGAGG 30099 |||| || ||||| ||||||| |||||| || | | | |||| || || |||| Sbjct 19940 CTTTTGGATTCCACGCGCACATGATGATACGGC-GACAGTTGGGATTCGTCTTGATCGTC 19882 Query 30100 TCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTG 30159 || | | | || ||||||||||| || ||| |||| |||||| || |||||| || Sbjct 19881 TCTATGACATTATGCAGCTGATCGACGCCCTGTCCCGTGTAGTCCGCGTGCATGTCTTTG 19822 Query 30160 TACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCC 30212 ||||| || || || || | ||||||||| ||||| || || || ||||| || Sbjct 19821 TACTCGGCGCCAAAGTGACGCCACTGGAAGCCGTAGACGGGGCCAAGGTCACC 19769 Score = 86.0 bits (94), Expect = 5e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 30228 GAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTACCCCCTT 30287 ||||||| || |||||||| | ||| || || ||||||||||| ||||| || || Sbjct 19147 GAAGCCCAGATTATCCAAAAACTGTCTCGATCCATTGGCGTCCCAAATCTTGACATTTTT 19088 Query 30288 CTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCTCCACGAC 30347 |||||| | ||| |||| ||| ||||| || ||| |||||| || || ||||| |||| Sbjct 19087 CTCGGACAACTCCTTGGCGTTCGTGGATCCCTTGATGAACCAGAGAAGTTCCTCAGCGAC 19028 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 407679328053011