Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_018874.1 Length=211518 Score E Sequences producing significant alignments: (Bits) Value seq24132 89.7 7e-13 seq50828 87.8 2e-12 >seq24132 Length=5592 Score = 89.7 bits (98), Expect = 7e-13 Identities = 78/97 (80%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 197108 CGCCGTAGGTTCCCGTTCTCTTTCCCACCCCGTTGAAGCCTCCGATAACCACCAGATCCA 197167 |||| || | ||||||| ||| ||||| ||| || |||| || || ||||| || |||| Sbjct 81 CGCCATATTTGCCCGTTCGCTTGCCCACTCCGATGTAGCCGCCTATGACCACAAGGTCCA 140 Query 197168 GAGTGTCGCACACCCCTTCCATGTAATCTTTCTTCAG 197204 | ||||||| ||| || ||||||||||||||||| || Sbjct 141 GGGTGTCGCCCACGCCGTCCATGTAATCTTTCTTGAG 177 >seq50828 Length=12526 Score = 87.8 bits (96), Expect = 2e-12 Identities = 83/105 (79%), Gaps = 1/105 (1%) Strand=Plus/Plus Query 197101 AAGAAAGC-GCCGTAGGTTCCCGTTCTCTTTCCCACCCCGTTGAAGCCTCCGATAACCAC 197159 ||| |||| ||| || | ||||||| ||| ||||| ||| || |||| || || ||||| Sbjct 9009 AAGGAAGCCGCCATATTTGCCCGTTCGCTTGCCCACTCCGATGTAGCCGCCTATGACCAC 9068 Query 197160 CAGATCCAGAGTGTCGCACACCCCTTCCATGTAATCTTTCTTCAG 197204 || |||| ||||||| ||| || ||||||||||||||||| || Sbjct 9069 GAGGTCCAAGGTGTCGCCCACGCCGTCCATGTAATCTTTCTTGAG 9113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 675135842578160