Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq172076 123 5e-23 seq18922 111 3e-19 seq44860 102 2e-16 seq60558 96.9 6e-15 seq179804 84.2 4e-11 >seq172076 Length=28491 Score = 123 bits (136), Expect = 5e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 || |||| |||||| | | ||||| ||| ||| || ||||||| || | || ||| Sbjct 2368 TCATCCCTGCTGATCAACTCGTTGCTGAACGTGAGCCCTGGCATGATACCACGCTTCTTG 2427 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCG 48274 ||||||||||| || || || ||||| ||||| |||||||| || || || ||||||||| Sbjct 2428 AGCCAGAAAATGGCGGCAAACGAGCCCGAGAAAAAGATGCCTTCGACGGCAGCGAACGCG 2487 Query 48275 GTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCC 48334 | | | ||| |||| |||| | | ||| |||||| | |||||||| ||| Sbjct 2488 ATCACTCGCTCGGCGAACGAAGAGGCGTCGTCGTTGATCCACTTGATGGCCCAGTCCGCC 2547 Query 48335 TTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG 48375 ||| ||||| ||| ||||| || || ||||| |||||| Sbjct 2548 TTCCGCTTGACGCAGGGCATAGTTTCGATGGCGTTGAAGAG 2588 >seq18922 Length=6667 Score = 111 bits (122), Expect = 3e-19 Identities = 157/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 48155 TCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATGACCCCCCTCTGTTTG 48214 || |||| ||||| | | ||||| ||| ||| || ||||||| || | || ||| Sbjct 2134 TCATCCCTACTGATCAACTCGTTGCTGAACGTGAGCCCTGGCATGATACCGCGCTTCTTG 2075 Query 48215 AGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCCACTGCCGCGAACGCG 48274 |||||||| || || ||||| ||||| ||||| |||||||| || || || ||||||||| Sbjct 2074 AGCCAGAAGATGGCGGCGAATGAGCCCGAGAAAAAGATGCCTTCGACGGCAGCGAACGCG 2015 Query 48275 GTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAAAGCGCCCAGTCTGCC 48334 | | | ||| |||| |||| | | || |||||| | |||||||| ||| Sbjct 2014 ATCACTCGCTCGGCGAACGAAGAGGCGTCATCGTTGATCCACTTGATGGCCCAGTCCGCC 1955 Query 48335 TTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAG 48375 ||| ||| | ||| ||||| || || ||||| |||||| Sbjct 1954 TTCCGCTTAACGCAGGGCATGGTTTCGATGGCGTTGAAGAG 1914 >seq44860 Length=53707 Score = 102 bits (112), Expect = 2e-16 Identities = 171/242 (71%), Gaps = 8/242 (3%) Strand=Plus/Minus Query 213726 TAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCCAGTCCCGGACAGGATGCGGGACAC 213785 ||||||| | || || | ||||| || || || |||||||| || |||||| Sbjct 3411 TAGAGCTTATCAAACTCCTCTCCCCACACATCATCGAGCCCCGGACACTCAGCCGGACAC 3352 Query 213786 ATGAGGCTCCAGTCCCCGTCATCTCTGACTCTCTGCATGAACAGGTCCGGGACCCACAGC 213845 ||||| |||| || |||| || || | || |||||| || ||||||| ||| | Sbjct 3351 ATGAGCGTCCATTCGCCGTTCGCTTCCACGCGCTTCATGAAGAGATCCGGGATCCAGACA 3292 Query 213846 GCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACT---CCAGAGTTTTTGCG-CAGATC 213901 || || || || | || ||| ||| || || || | ||| ||||| ||| || Sbjct 3291 GCATAAAAGAGATCAC--GTGCTC-TCTGTTCTTCTTTGCCGGTGTTCTTGCGGCAG-TC 3236 Query 213902 TAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCGGCCT 213961 || ||||| |||||||| |||||||||||||| | ||||||||||||||| || || || Sbjct 3235 GAGGAAGTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAGGCACCGGGTCT 3176 Query 213962 CT 213963 || Sbjct 3175 CT 3174 Score = 95.1 bits (104), Expect = 2e-14 Identities = 87/110 (79%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 213531 TACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTT 213590 ||||||| ||||| ||||||| ||||||||| ||||||||||| |||||| ||||| Sbjct 4471 TACTCCACAATCTCCGTGCACAAGTTGCTGCACTTGATGGTGCCCAAGTTCTGTTGGTTG 4412 Query 213591 GACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTC 213640 ||| |||| | |||||||||||||||||||| | |||||||| Sbjct 4411 CTCTTCCGGTTGCAGGCGTCCTTGTAGAGCATGTAGGGAGTTCCGGTCTC 4362 >seq60558 Length=5495 Score = 96.9 bits (106), Expect = 6e-15 Identities = 149/204 (73%), Gaps = 8/204 (4%) Strand=Plus/Minus Query 213759 TCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGT-CATCTCTGACTCT 213817 || || || ||||| || ||||||||||| |||| || |||| | ||| || | Sbjct 2343 TCGAGCCCTGGACACTCCGCCGGACACATGAGCGTCCACTCGCCGTTCGCCTCA-ACGCG 2285 Query 213818 CTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTC-CT-CTCG 213875 || |||||| || ||||||| ||| | ||| || || || | || ||| || ||| Sbjct 2284 CTTCATGAAGAGATCCGGGATCCAGACCGCATAAAAGAGATCAC--GTGCTCGCTGCTCC 2227 Query 213876 TCCACTCCAGAGTTTTTGCG-CAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTC 213934 ||| || | ||| ||||| ||| || || || ||||||||||| |||||||| ||||| Sbjct 2226 TCCTTGCCGGTGTTCTTGCGGCAG-TCGAGGAAATCAAAGATGTCGGCGTGCCATGGCTC 2168 Query 213935 CATGTAGATGGCAAAGGCGCCCGG 213958 | |||||||||||| ||||| || Sbjct 2167 GAGGTAGATGGCAAACGCGCCTGG 2144 Score = 87.8 bits (96), Expect = 3e-12 Identities = 90/118 (76%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 213531 TACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTT 213590 ||||||| ||||| ||||||||||||||||| ||||||||||| |||||| ||||| Sbjct 3758 TACTCCACAATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAAGTTCTGTTGGTTG 3699 Query 213591 GACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGG 213648 ||| |||| | |||||||| ||||| ||||| | || || |||| |||| Sbjct 3698 CTCTTCCGGTTGCAGGCGTCCTTGTACAGCATATAGGGCGTGCCTGTTTCTACTTGGG 3641 >seq179804 Length=4616 Score = 84.2 bits (92), Expect = 4e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 212961 GTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATG 213020 ||||| |||||||| |||||||| || ||||||||||| || ||||||||||||| Sbjct 3666 GTGTATGGCTCGATTGATTCGTTGTTGCCAAGAATCTGTGCTGTCGAGGCTGTGGGCATG 3725 Query 213021 GGAGCCACCAGGAGACTGTTCCTCACTCCGT 213051 || || | ||| |||||||| | ||| |||| Sbjct 3726 GGGGCAAGCAGCAGACTGTTGCGCACACCGT 3756 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 929338958746880