Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq172076 143 5e-29 seq60558 134 3e-26 seq18922 129 1e-24 seq44860 113 8e-20 >seq172076 Length=28491 Score = 143 bits (158), Expect = 5e-29 Identities = 160/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 25795 GCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAAC 25854 |||||||| || ||| || ||||| |||||||| |||||||| |||||||||||| Sbjct 2579 GCCATCGAAACTATGCCCTGCGTCAAGCGGAAGGCGGACTGGGCCATCAAGTGGATCAAC 2520 Query 25855 AGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTT 25914 | | | || |||| | |||||| || | || || ||||| || || ||||||||| Sbjct 2519 GACGACGCCTCTTCGTTCGCCGAGCGAGTGATCGCGTTCGCTGCCGTCGAAGGCATCTTT 2460 Query 25915 TTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTG 25974 ||| || |||||||| ||||| |||||||||||| || || | |||||| ||||| Sbjct 2459 TTCTCGGGCTCGTTTGCCGCCATTTTCTGGCTCAAGAAGCGTGGTATCATGCCAGGGCTC 2400 Query 25975 TACTTTTCCAACGAGCTCATCAGCAGGGACGAGG 26008 || ||||||| | ||||||||||| |||| Sbjct 2399 ACGTTCAGCAACGAGTTGATCAGCAGGGATGAGG 2366 >seq60558 Length=5495 Score = 134 bits (148), Expect = 3e-26 Identities = 177/243 (73%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 221941 GGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGG 222000 || |||||| | ||||||| || || || | || || || ||||||||| || || Sbjct 2380 GGCATAGAGTTTATCAAACTCCTCTCCCCACACATCATCGAGCCCTGGACACTCCGCCGG 2321 Query 222001 ACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCA 222060 |||||| || |||| | ||| | | || | || ||||||||| ||||||||||| Sbjct 2320 ACACATGAGCGTCCACTCGCCGTTCGCCTCAACGCGCTTCATGAAGAGATCCGGGATCCA 2261 Query 222061 CAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTT-TTTCCTCAGAT 222119 | ||| | ||||||||| | | |||||||||||| |||| |||| || | ||| | Sbjct 2260 GACCGCATAAAAGAGATCACGTGCTCGCTGCTCCTCCTTGCCGGTGTTCTTGCGGCAG-T 2202 Query 222120 CCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTC 222179 | | || ||||| ||||| |||||||| ||||| || |||| ||| | ||||| |||| Sbjct 2201 CGAGGAAATCAAAGATGTCGGCGTGCCATGGCTCGAGGTAGATGGCAAACGCGCCTGGTC 2142 Query 222180 GCT 222182 ||| Sbjct 2141 GCT 2139 >seq18922 Length=6667 Score = 129 bits (142), Expect = 1e-24 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 25795 GCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAGTGGATCAAC 25854 |||||||| ||| ||| || | ||| |||||||| |||||||| |||||||||||| Sbjct 1923 GCCATCGAAACCATGCCCTGCGTTAAGCGGAAGGCGGACTGGGCCATCAAGTGGATCAAC 1982 Query 25855 AGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTT 25914 | | || |||| | |||||| || | || || ||||| || || ||||||||| Sbjct 1983 GATGACGCCTCTTCGTTCGCCGAGCGAGTGATCGCGTTCGCTGCCGTCGAAGGCATCTTT 2042 Query 25915 TTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTG 25974 ||| || || || || |||||||||||||||||| || || | |||||| ||||| Sbjct 2043 TTCTCGGGCTCATTCGCCGCCATCTTCTGGCTCAAGAAGCGCGGTATCATGCCAGGGCTC 2102 Query 25975 TACTTTTCCAACGAGCTCATCAGCAGGGACGAGG 26008 || ||||||| | ||||| ||||| |||| Sbjct 2103 ACGTTCAGCAACGAGTTGATCAGTAGGGATGAGG 2136 >seq44860 Length=53707 Score = 113 bits (124), Expect = 8e-20 Identities = 176/248 (71%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 221941 GGTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGG 222000 || ||||||| | ||||||| || || || | || || || || |||||| || || Sbjct 3415 GGCATAGAGCTTATCAAACTCCTCTCCCCACACATCATCGAGCCCCGGACACTCAGCCGG 3356 Query 222001 ACACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCA 222060 |||||| || |||| | ||| ||| || | || ||||||||| ||||||||||| Sbjct 3355 ACACATGAGCGTCCATTCGCCGTTCGCTTCCACGCGCTTCATGAAGAGATCCGGGATCCA 3296 Query 222061 CAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCT-CAGAT 222119 | || | ||||||||| | | | ||| || || |||| |||| || | ||| | Sbjct 3295 GACAGCATAAAAGAGATCACGTGCTCTCTGTTCTTCTTTGCCGGTGTTCTTGCGGCAG-T 3237 Query 222120 CCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTC 222179 | | || || || ||||| |||||||||||||| || |||| ||| | || ||||||| Sbjct 3236 CGAGGAAGTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAGGCACCGGGTC 3177 Query 222180 GCTTGTTG 222187 | ||||| Sbjct 3176 TC-TGTTG 3170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 926657289222080