Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq176294 91.5 3e-13 seq159113 91.5 3e-13 >seq176294 Length=1487 Score = 91.5 bits (100), Expect = 3e-13 Identities = 162/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || || || ||||| | ||||| || || || || || || Sbjct 1029 ATTCCACCACGAAGGCGCAACACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAGTC- 971 Query 171900 GATAA-AGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 | ||| || || | || || | |||||| ||||| || || | |||||| |||||||| Sbjct 970 GCTAAGAGTGCGACCATCTTCAAGTTGTTTTCCAGCGAAGATCAGTCTCTGCTGGTCAGG 911 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || || || ||||| || || || || |||||||| || || || | || Sbjct 910 GGGAATACCCTCTTTGTCCTGAATCTTTGCCTTTACATTCTCGATGGTGTCACTTGGCTC 851 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || ||||||||||| || || |||| || || | ||| ||||||||||| Sbjct 850 CACCTCGAGAGTAATGGTCTTGCCGGTTAGGGTCTTGACGAAGATCTGCATTTT 797 >seq159113 Length=23055 Score = 91.5 bits (100), Expect = 3e-13 Identities = 162/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 || ||||| | ||| || || || ||||| | ||||| || || ||||| || || Sbjct 22313 ATTCCACCACGAAGGCGCAACACCAAATGAAGAGTAGATTCCTTTTGGATATTGTAGTC- 22255 Query 171900 GATAA-AGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGG 171958 | ||| || || | || || | |||||| ||||| || |||| ||||| |||||||| Sbjct 22254 GCTAAGAGTGCGACCATCTTCAAGTTGTTTTCCAGCGAAGATTAGCCTCTGCTGGTCAGG 22195 Query 171959 TGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTC 172018 || || || ||||| || || || || |||||||| || || || | || Sbjct 22194 GGGAATACCCTCTTTGTCCTGAATCTTTGCCTTTACATTCTCGATTGTGTCACTTGGCTC 22135 Query 172019 TACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || || ||||||||||| || || || | || || | ||| ||||||||||| Sbjct 22134 CACCTCGAGAGTAATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATTTT 22081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903004325520600