Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq18922 163 3e-34 seq172076 147 3e-29 seq60558 96.9 4e-14 seq44860 96.9 4e-14 seq130638 86.0 8e-11 >seq18922 Length=6667 Score = 163 bits (180), Expect = 3e-34 Identities = 173/226 (77%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 869183 TCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTG 869242 || || | |||||||| |||||||| || | ||| || ||||||| |||||||||||| Sbjct 2134 TCATCCCTACTGATCAACTCGTTGCTGAACGTGAGCCCTGGCATGATACCGCGCTTCTTG 2075 Query 869243 AGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCG 869302 ||||| ||||||||| ||| |||||||||||||||||| |||||||| || || || Sbjct 2074 AGCCAGAAGATGGCGGCGAATGAGCCCGAGAAAAAGATGCCTTCGACGGCAGCGAACGCG 2015 Query 869303 ATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCG 869362 || | |||||||| || | |||| | || | |||||||||||| || |||||||| Sbjct 2014 ATCACTCGCTCGGCGAA--CGAAGAGG-CGTCATCGTTGATCCACTTGATGGCCCAGTCC 1958 Query 869363 GCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT 869408 ||||| | | || | |||| || ||||||||| ||||||| Sbjct 1957 GCCTTCCGCTTAACGCAGGGCATGGTTTCGATGGCGTTGAAGAGGT 1912 Score = 113 bits (124), Expect = 5e-19 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 869729 ACGATGCCGTCGCTGGCGGCGAAAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCG 869788 |||||||||||||| || ||||| || |||| |||||| || ||||| ||||| || Sbjct 1311 ACGATGCCGTCGCTTGCCGCGAAGAACGCCAAGACGTGAGAAATGAAGTGCCGCTCCTCA 1252 Query 869789 TCGCTGAGCGACACCCAGTGGACGGTGTCGG-CGCTGAGGTCCACCTCCTCGGCGGTCCA 869847 || | |||| |||||||| | ||| || | || ||||| ||||| || ||||| Sbjct 1251 TCTTTTAGCGTATCCCAGTGGCCCAGGTCTTTCGAT-AGATCCACTTCCTCTGCAGTCCA 1193 Query 869848 GATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAG 869907 || ||||| ||||||||||||||||| | ||| | | ||||| ||||| || | Sbjct 1192 GAAAGAGGCTTCGGCCTTTTTGTACATTTGCCAGATGTCATGGTATTTTATAGGAAACAC 1133 Query 869908 GACAAAGCGGTTGGGGTTGTC 869928 ||||| ||| ||| ||||| Sbjct 1132 CACAAACCGGCGGGGATTGTC 1112 >seq172076 Length=28491 Score = 147 bits (162), Expect = 3e-29 Identities = 164/217 (76%), Gaps = 3/217 (1%) Strand=Plus/Plus Query 869192 CTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAG 869251 ||||||| |||||||| || | ||| || ||||||| || |||||||||||||| || Sbjct 2377 CTGATCAACTCGTTGCTGAACGTGAGCCCTGGCATGATACCACGCTTCTTGAGCCAGAAA 2436 Query 869252 ATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGC 869311 |||||| || |||||||||||||||||| |||||||| || || |||| | ||| Sbjct 2437 ATGGCGGCAAACGAGCCCGAGAAAAAGATGCCTTCGACGGCAGCGAACGCGATCACTCGC 2496 Query 869312 TCGGCAAAGGTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTC 869371 ||||| || | |||| | || | |||||||||||| || |||||||| ||||| | Sbjct 2497 TCGGCGAA--CGAAGAGG-CGTCGTCGTTGATCCACTTGATGGCCCAGTCCGCCTTCCGC 2553 Query 869372 CTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGT 869408 | || | |||| || ||||||||| ||||||| Sbjct 2554 TTGACGCAGGGCATAGTTTCGATGGCGTTGAAGAGGT 2590 Score = 113 bits (124), Expect = 5e-19 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Plus Query 869729 ACGATGCCGTCGCTGGCGGCGAAAAAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCG 869788 |||||||||||||| || ||||| || |||| |||||| || ||||| |||||||| Sbjct 3350 ACGATGCCGTCGCTTGCCGCGAAGAACGCCAAGACGTGAGAAATGAAGTGTCGCTCGTCA 3409 Query 869789 TCGCTGAGCGACACCCAGTGGACGGTGTCGG-CGCTGAGGTCCACCTCCTCGGCGGTCCA 869847 || | | || |||||||| | ||| || | || ||||| ||||| || ||||| Sbjct 3410 TCTTTTAACGTATCCCAGTGGCCCAGGTCTTTCGAT-AGATCCACTTCCTCTGCAGTCCA 3468 Query 869848 GATCGAGGCCTCGGCCTTTTTGTACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAG 869907 || ||||| ||||||||||||||||| | ||| | | ||||| ||||| || | Sbjct 3469 GAAAGAGGCTTCGGCCTTTTTGTACATTTGCCAGATGTCATGGTATTTAATAGGAAACAC 3528 Query 869908 GACAAAGCGGTTGGGGTTGTC 869928 ||||| ||| ||| ||||| Sbjct 3529 CACAAACCGGCGGGGATTGTC 3549 >seq60558 Length=5495 Score = 96.9 bits (106), Expect = 4e-14 Identities = 131/183 (72%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 1628400 CTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTC 1628459 ||| | |||||| | ||||| ||| ||||| | | | |||| ||| ||||| || Sbjct 2329 CTCCGCCGGACACATGAGCGTCCACTCGCCGTTCGCCTCAACGCGCTTCATGAAGAGATC 2270 Query 1628460 ACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTT 1628519 |||| | || |||||||| || || || || | ||||||||||||| |||||| Sbjct 2269 CGGGATCCAGACCGCATAAAAGAGATCACGTGCTCGCTGCTCCTCCTTGCCGGTGTTCTT 2210 Query 1628520 TTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGC 1628579 | |||||| | || | |||||||||||||| ||||| |||||| |||||| || Sbjct 2209 GCGGCAGTCGAGGAAATCAAAGATGTCGGCGTGCCATGGCTCGAGGTAGATGGCAAACGC 2150 Query 1628580 GCC 1628582 ||| Sbjct 2149 GCC 2147 Score = 87.8 bits (96), Expect = 2e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 || ||||| |||||||||||| || | | || |||| |||||| |||||| | || Sbjct 3752 ACAATCTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAAGTTCTGTTGGTTGCTCTTC 3693 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 ||||| ||||||||||| ||||| ||||||| ||| || || | || ||| ||| | Sbjct 3692 CGGTTGCAGGCGTCCTTGTACAGCATATAGGGCGTGCCTGTTTCTACTTGGGCCTCGATG 3633 Query 1628287 ATGGCCGACCA 1628297 ||||| |||| Sbjct 3632 ATGGCGTACCA 3622 >seq44860 Length=53707 Score = 96.9 bits (106), Expect = 4e-14 Identities = 100/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 1628167 ACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTGCTGGTTGGTGGTC 1628226 || ||||| ||||||| |||| || | | || |||| |||||| |||||| | || Sbjct 4465 ACAATCTCCGTGCACAAGTTGCTGCACTTGATGGTGCCCAAGTTCTGTTGGTTGCTCTTC 4406 Query 1628227 AGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGATCTGCGCCGCGACG 1628286 ||||| ||||||||||| |||||||||||| | |||||||||| |||||| ||| Sbjct 4405 CGGTTGCAGGCGTCCTTGTAGAGCATGTAGGGAGTTCCGGTCTCGACTTGCGCCTCGATA 4346 Query 1628287 ATGGCCGACCA 1628297 ||||| |||| Sbjct 4345 ATGGCATACCA 4335 Score = 91.5 bits (100), Expect = 2e-12 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 1628400 CTCGGACGGACAAAAGAGCGACCAGTCGCCACCGGTCACCGCGCGGCGCATAAAGAGGTC 1628459 ||| | |||||| | ||||| ||| ||||| | || |||| ||| ||||| || Sbjct 3364 CTCAGCCGGACACATGAGCGTCCATTCGCCGTTCGCTTCCACGCGCTTCATGAAGAGATC 3305 Query 1628460 ACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTT 1628519 |||| | || |||||||| || || || | | || || |||||| |||||| Sbjct 3304 CGGGATCCAGACAGCATAAAAGAGATCACGTGCTCTCTGTTCTTCTTTGCCGGTGTTCTT 3245 Query 1628520 TTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGC 1628579 | |||||| |||||| |||||||||||||||||||| |||||| ||||||||| Sbjct 3244 GCGGCAGTCGAGGAAGTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAGGC 3185 Query 1628580 GCC 1628582 || Sbjct 3184 ACC 3182 >seq130638 Length=52081 Score = 86.0 bits (94), Expect = 8e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || || ||||| ||||||||| | || | || | |||||| | ||||||||| Sbjct 9283 GCAGCGAATTACCTTGACATCAAGGGTTTGTTGGACGTCACTTGCAAGACGGTGGCCAAC 9224 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAA 1592295 |||||||| |||||| ||||||| || ||| | ||||| || |||||||| Sbjct 9223 ATGATCAAAGGCAAGACGCCCGAAGAAATCAGGAAGACATTCAACATCAA 9174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6091677639270019