Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11]
188,407 sequences; 1,026,046,400 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq18922 150 3e-30
seq172076 132 8e-25
seq60558 93.3 7e-13
seq44860 93.3 7e-13
seq179804 91.5 2e-12
>seq18922
Length=6667
Score = 150 bits (166), Expect = 3e-30
Identities = 174/231 (75%), Gaps = 4/231 (2%)
Strand=Plus/Minus
Query 794339 CACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCT 794398
||||| | || | ||||||||| |||||||| || ||| || ||||||| |||||||
Sbjct 2138 CACCT-CATCCCTACTGATCAACTCGTTGCTGAACGTGAGCCCTGGCATGATACCGCGCT 2080
Query 794399 TCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458
|||||||||| |||||||| ||| |||||||||||||||||| |||||||| || |
Sbjct 2079 TCTTGAGCCAGAAGATGGCGGCGAATGAGCCCGAGAAAAAGATGCCTTCGACGGCAGCGA 2020
Query 794459 AGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCC 794518
| ||| | |||||||| || | ||| | || | |||||||||||| || ||||
Sbjct 2019 ACGCGATCACTCGCTCGGCGAA--CGAAGAGG-CGTCATCGTTGATCCACTTGATGGCCC 1963
Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT 794569
| || ||||| | | || |||||| || ||||||||| |||||||
Sbjct 1962 AGTCCGCCTTCCGCTTAACGCAGGGCATGGTTTCGATGGCGTTGAAGAGGT 1912
Score = 100 bits (110), Expect = 4e-15
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260
|||||||||||||| || ||||| || || | |||||| || ||||| ||||| ||
Sbjct 1311 ACGATGCCGTCGCTTGCCGCGAAGAACGCCAAGACGTGAGAAATGAAGTGCCGCTCCTCA 1252
Query 796261 TCGCTGAGCGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAA 796320
|| | |||| |||||||| || ||| || || || ||||| || |||||
Sbjct 1251 TCTTTTAGCGTATCCCAGTGGCCCAGGTCTTTCGATAGATCCACTTCCTCTGCAGTCCAG 1192
Query 796321 AAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGA 796380
|| ||||| ||||||||||||||||| | ||| || ||||| || || ||||
Sbjct 1191 AAAGAGGCTTCGGCCTTTTTGTACATTTGCCAGATGTCATGGTATTTTATAGGAAACACC 1132
Query 796381 ACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415
||||| || ||| || || ||||| |||||
Sbjct 1131 ACAAACCGGCGGGGATTGTCCTTCAGCAGTGGCTC 1097
>seq172076
Length=28491
Score = 132 bits (146), Expect = 8e-25
Identities = 161/217 (74%), Gaps = 3/217 (1%)
Strand=Plus/Plus
Query 794353 CTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAG 794412
|||||||| |||||||| || ||| || ||||||| || |||||||||||||| ||
Sbjct 2377 CTGATCAACTCGTTGCTGAACGTGAGCCCTGGCATGATACCACGCTTCTTGAGCCAGAAA 2436
Query 794413 ATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGC 794472
||||| || |||||||||||||||||| |||||||| || || ||| | |||
Sbjct 2437 ATGGCGGCAAACGAGCCCGAGAAAAAGATGCCTTCGACGGCAGCGAACGCGATCACTCGC 2496
Query 794473 TCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTC 794532
||||| || | ||| | || | |||||||||||| || ||||| || ||||| |
Sbjct 2497 TCGGCGAA--CGAAGAGG-CGTCGTCGTTGATCCACTTGATGGCCCAGTCCGCCTTCCGC 2553
Query 794533 CTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT 794569
| || |||||| || ||||||||| |||||||
Sbjct 2554 TTGACGCAGGGCATAGTTTCGATGGCGTTGAAGAGGT 2590
Score = 100 bits (110), Expect = 4e-15
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260
|||||||||||||| || ||||| || || | |||||| || ||||| ||||||||
Sbjct 3350 ACGATGCCGTCGCTTGCCGCGAAGAACGCCAAGACGTGAGAAATGAAGTGTCGCTCGTCA 3409
Query 796261 TCGCTGAGCGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAA 796320
|| | | || |||||||| || ||| || || || ||||| || |||||
Sbjct 3410 TCTTTTAACGTATCCCAGTGGCCCAGGTCTTTCGATAGATCCACTTCCTCTGCAGTCCAG 3469
Query 796321 AAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGA 796380
|| ||||| ||||||||||||||||| | ||| || ||||| || || ||||
Sbjct 3470 AAAGAGGCTTCGGCCTTTTTGTACATTTGCCAGATGTCATGGTATTTAATAGGAAACACC 3529
Query 796381 ACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415
||||| || ||| || || ||||| |||||
Sbjct 3530 ACAAACCGGCGGGGATTGTCCTTCAGCAGTGGCTC 3564
Score = 86.0 bits (94), Expect = 1e-10
Identities = 68/82 (83%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 794586 GTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGC 794645
|||||||| |||||| |||||||| || ||| | || ||||||||||||||| ||||
Sbjct 2912 GTCCTTGATGTAGGTATCGATGAGTAGACTGTACATTTCCGAGTGGATGTTTTCGGTGGC 2971
Query 794646 GATCTGGAAGCCATAAAAGCAG 794667
||||||| ||||||| || |||
Sbjct 2972 GATCTGGTAGCCATAGAAACAG 2993
>seq60558
Length=5495
Score = 93.3 bits (102), Expect = 7e-13
Identities = 96/126 (76%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 2071584 CTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTGGTCAGGTT 2071643
||| |||||||||||| || | ||||||||| |||||| |||||||| || ||||
Sbjct 3747 CTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAAGTTCTGTTGGTTGCTCTTCCGGTT 3688
Query 2071644 GACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACGATGGC 2071703
| ||||||||||| |||||| ||||||| || || || | || ||| || ||||||
Sbjct 3687 GCAGGCGTCCTTGTACAGCATATAGGGCGTGCCTGTTTCTACTTGGGCCTCGATGATGGC 3628
Query 2071704 CGACCA 2071709
||||
Sbjct 3627 GTACCA 3622
Score = 91.5 bits (100), Expect = 2e-12
Identities = 130/183 (71%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 2071812 CTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTC 2071871
||| | ||| || | ||||| ||| |||||| | | | ||||| ||| || || ||
Sbjct 2329 CTCCGCCGGACACATGAGCGTCCACTCGCCGTTCGCCTCAACGCGCTTCATGAAGAGATC 2270
Query 2071872 GCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTT 2071931
|||| | | ||||||||||| || || || | ||||||||||||| ||||||
Sbjct 2269 CGGGATCCAGACCGCATAAAAGAGATCACGTGCTCGCTGCTCCTCCTTGCCGGTGTTCTT 2210
Query 2071932 TTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGC 2071991
|||||| | || | || |||||||||||| ||||| |||||| |||||| ||
Sbjct 2209 GCGGCAGTCGAGGAAATCAAAGATGTCGGCGTGCCATGGCTCGAGGTAGATGGCAAACGC 2150
Query 2071992 GCC 2071994
|||
Sbjct 2149 GCC 2147
>seq44860
Length=53707
Score = 93.3 bits (102), Expect = 7e-13
Identities = 96/126 (76%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 2071584 CTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTGGTCAGGTT 2071643
||| ||||||| |||| || | ||||||||| |||||| |||||||| || ||||
Sbjct 4460 CTCCGTGCACAAGTTGCTGCACTTGATGGTGCCCAAGTTCTGTTGGTTGCTCTTCCGGTT 4401
Query 2071644 GACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACGATGGC 2071703
| ||||||||||| ||||||||||| | || ||||||| |||||| || |||||
Sbjct 4400 GCAGGCGTCCTTGTAGAGCATGTAGGGAGTTCCGGTCTCGACTTGCGCCTCGATAATGGC 4341
Query 2071704 CGACCA 2071709
||||
Sbjct 4340 ATACCA 4335
Score = 91.5 bits (100), Expect = 2e-12
Identities = 102/134 (76%), Gaps = 2/134 (1%)
Strand=Plus/Minus
Query 2069616 AAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTG-ATGACCTCGCACGCCT 2069674
||| || || || || ||||| ||||| ||||||||||||||| ||| |||| | |
Sbjct 6283 AAACTCTCCAGACAGGACGCGACGCGTATAGATGTTGCTCGTGTATG-GCTCGATTGATT 6225
Query 2069675 CGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAGCGAGT 2069734
|| ||||||| || ||||||| ||||| ||| ||||||||| | || | ||||| ||
Sbjct 6224 CGTTGTTGCCAAGAATCTGCGCCGTCGAGGCAGTGGGCATGGGAGCGAGAAGCAGACTGT 6165
Query 2069735 TGCGCAGGCCGTAC 2069748
|||| | ||||||
Sbjct 6164 TGCGTACACCGTAC 6151
Score = 87.8 bits (96), Expect = 3e-11
Identities = 129/183 (70%), Gaps = 0/183 (0%)
Strand=Plus/Minus
Query 2071812 CTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTC 2071871
||| | ||| || | ||||| ||| |||||| | ||||||| ||| || || ||
Sbjct 3364 CTCAGCCGGACACATGAGCGTCCATTCGCCGTTCGCTTCCACGCGCTTCATGAAGAGATC 3305
Query 2071872 GCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTT 2071931
|||| | | ||||||||||| || || | | || || |||||| ||||||
Sbjct 3304 CGGGATCCAGACAGCATAAAAGAGATCACGTGCTCTCTGTTCTTCTTTGCCGGTGTTCTT 3245
Query 2071932 TTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGC 2071991
|||||| |||||| || |||||||||||||||||| |||||| |||||||||
Sbjct 3244 GCGGCAGTCGAGGAAGTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAGGC 3185
Query 2071992 GCC 2071994
||
Sbjct 3184 ACC 3182
>seq179804
Length=4616
Score = 91.5 bits (100), Expect = 2e-12
Identities = 102/134 (76%), Gaps = 2/134 (1%)
Strand=Plus/Plus
Query 2069616 AAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTG-ATGACCTCGCACGCCT 2069674
||| || || || |||||||| ||||| ||||||||||||||| ||| |||| | |
Sbjct 3626 AAACTCTCCAGACAGCACGCGACGCGTATAGATGTTGCTCGTGTATG-GCTCGATTGATT 3684
Query 2069675 CGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAGCGAGT 2069734
|| ||||||| || ||||| | |||| ||| ||||||||| | || | ||||| ||
Sbjct 3685 CGTTGTTGCCAAGAATCTGTGCTGTCGAGGCTGTGGGCATGGGGGCAAGCAGCAGACTGT 3744
Query 2069735 TGCGCAGGCCGTAC 2069748
|||||| ||||||
Sbjct 3745 TGCGCACACCGTAC 3758
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7896204688085673
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |