Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq18922 150 3e-30 seq172076 132 8e-25 seq60558 93.3 7e-13 seq44860 93.3 7e-13 seq179804 91.5 2e-12 >seq18922 Length=6667 Score = 150 bits (166), Expect = 3e-30 Identities = 174/231 (75%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 794339 CACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCT 794398 ||||| | || | ||||||||| |||||||| || ||| || ||||||| ||||||| Sbjct 2138 CACCT-CATCCCTACTGATCAACTCGTTGCTGAACGTGAGCCCTGGCATGATACCGCGCT 2080 Query 794399 TCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAA 794458 |||||||||| |||||||| ||| |||||||||||||||||| |||||||| || | Sbjct 2079 TCTTGAGCCAGAAGATGGCGGCGAATGAGCCCGAGAAAAAGATGCCTTCGACGGCAGCGA 2020 Query 794459 AGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCC 794518 | ||| | |||||||| || | ||| | || | |||||||||||| || |||| Sbjct 2019 ACGCGATCACTCGCTCGGCGAA--CGAAGAGG-CGTCATCGTTGATCCACTTGATGGCCC 1963 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT 794569 | || ||||| | | || |||||| || ||||||||| ||||||| Sbjct 1962 AGTCCGCCTTCCGCTTAACGCAGGGCATGGTTTCGATGGCGTTGAAGAGGT 1912 Score = 100 bits (110), Expect = 4e-15 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260 |||||||||||||| || ||||| || || | |||||| || ||||| ||||| || Sbjct 1311 ACGATGCCGTCGCTTGCCGCGAAGAACGCCAAGACGTGAGAAATGAAGTGCCGCTCCTCA 1252 Query 796261 TCGCTGAGCGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAA 796320 || | |||| |||||||| || ||| || || || ||||| || ||||| Sbjct 1251 TCTTTTAGCGTATCCCAGTGGCCCAGGTCTTTCGATAGATCCACTTCCTCTGCAGTCCAG 1192 Query 796321 AAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGA 796380 || ||||| ||||||||||||||||| | ||| || ||||| || || |||| Sbjct 1191 AAAGAGGCTTCGGCCTTTTTGTACATTTGCCAGATGTCATGGTATTTTATAGGAAACACC 1132 Query 796381 ACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 ||||| || ||| || || ||||| ||||| Sbjct 1131 ACAAACCGGCGGGGATTGTCCTTCAGCAGTGGCTC 1097 >seq172076 Length=28491 Score = 132 bits (146), Expect = 8e-25 Identities = 161/217 (74%), Gaps = 3/217 (1%) Strand=Plus/Plus Query 794353 CTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAG 794412 |||||||| |||||||| || ||| || ||||||| || |||||||||||||| || Sbjct 2377 CTGATCAACTCGTTGCTGAACGTGAGCCCTGGCATGATACCACGCTTCTTGAGCCAGAAA 2436 Query 794413 ATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGC 794472 ||||| || |||||||||||||||||| |||||||| || || ||| | ||| Sbjct 2437 ATGGCGGCAAACGAGCCCGAGAAAAAGATGCCTTCGACGGCAGCGAACGCGATCACTCGC 2496 Query 794473 TCGGCAAAAGTGTCCAGGCCCTCTTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTC 794532 ||||| || | ||| | || | |||||||||||| || ||||| || ||||| | Sbjct 2497 TCGGCGAA--CGAAGAGG-CGTCGTCGTTGATCCACTTGATGGCCCAGTCCGCCTTCCGC 2553 Query 794533 CTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGT 794569 | || |||||| || ||||||||| ||||||| Sbjct 2554 TTGACGCAGGGCATAGTTTCGATGGCGTTGAAGAGGT 2590 Score = 100 bits (110), Expect = 4e-15 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 796201 ACGATGCCGTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCG 796260 |||||||||||||| || ||||| || || | |||||| || ||||| |||||||| Sbjct 3350 ACGATGCCGTCGCTTGCCGCGAAGAACGCCAAGACGTGAGAAATGAAGTGTCGCTCGTCA 3409 Query 796261 TCGCTGAGCGAGACCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAA 796320 || | | || |||||||| || ||| || || || ||||| || ||||| Sbjct 3410 TCTTTTAACGTATCCCAGTGGCCCAGGTCTTTCGATAGATCCACTTCCTCTGCAGTCCAG 3469 Query 796321 AAGGAGGCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGA 796380 || ||||| ||||||||||||||||| | ||| || ||||| || || |||| Sbjct 3470 AAAGAGGCTTCGGCCTTTTTGTACATTTGCCAGATGTCATGGTATTTAATAGGAAACACC 3529 Query 796381 ACAAAGCGATTGGGGTTCTCGCGTAGCAGCGGCTC 796415 ||||| || ||| || || ||||| ||||| Sbjct 3530 ACAAACCGGCGGGGATTGTCCTTCAGCAGTGGCTC 3564 Score = 86.0 bits (94), Expect = 1e-10 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 794586 GTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGC 794645 |||||||| |||||| |||||||| || ||| | || ||||||||||||||| |||| Sbjct 2912 GTCCTTGATGTAGGTATCGATGAGTAGACTGTACATTTCCGAGTGGATGTTTTCGGTGGC 2971 Query 794646 GATCTGGAAGCCATAAAAGCAG 794667 ||||||| ||||||| || ||| Sbjct 2972 GATCTGGTAGCCATAGAAACAG 2993 >seq60558 Length=5495 Score = 93.3 bits (102), Expect = 7e-13 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 2071584 CTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTGGTCAGGTT 2071643 ||| |||||||||||| || | ||||||||| |||||| |||||||| || |||| Sbjct 3747 CTCCGTGCACAGGTTGCTGCACTTGATGGTGCCCAAGTTCTGTTGGTTGCTCTTCCGGTT 3688 Query 2071644 GACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACGATGGC 2071703 | ||||||||||| |||||| ||||||| || || || | || ||| || |||||| Sbjct 3687 GCAGGCGTCCTTGTACAGCATATAGGGCGTGCCTGTTTCTACTTGGGCCTCGATGATGGC 3628 Query 2071704 CGACCA 2071709 |||| Sbjct 3627 GTACCA 3622 Score = 91.5 bits (100), Expect = 2e-12 Identities = 130/183 (71%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 2071812 CTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTC 2071871 ||| | ||| || | ||||| ||| |||||| | | | ||||| ||| || || || Sbjct 2329 CTCCGCCGGACACATGAGCGTCCACTCGCCGTTCGCCTCAACGCGCTTCATGAAGAGATC 2270 Query 2071872 GCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTT 2071931 |||| | | ||||||||||| || || || | ||||||||||||| |||||| Sbjct 2269 CGGGATCCAGACCGCATAAAAGAGATCACGTGCTCGCTGCTCCTCCTTGCCGGTGTTCTT 2210 Query 2071932 TTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGC 2071991 |||||| | || | || |||||||||||| ||||| |||||| |||||| || Sbjct 2209 GCGGCAGTCGAGGAAATCAAAGATGTCGGCGTGCCATGGCTCGAGGTAGATGGCAAACGC 2150 Query 2071992 GCC 2071994 ||| Sbjct 2149 GCC 2147 >seq44860 Length=53707 Score = 93.3 bits (102), Expect = 7e-13 Identities = 96/126 (76%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 2071584 CTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTGCTGGTTGCTGGTCAGGTT 2071643 ||| ||||||| |||| || | ||||||||| |||||| |||||||| || |||| Sbjct 4460 CTCCGTGCACAAGTTGCTGCACTTGATGGTGCCCAAGTTCTGTTGGTTGCTCTTCCGGTT 4401 Query 2071644 GACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGATCTGCGCCGTGACGATGGC 2071703 | ||||||||||| ||||||||||| | || ||||||| |||||| || ||||| Sbjct 4400 GCAGGCGTCCTTGTAGAGCATGTAGGGAGTTCCGGTCTCGACTTGCGCCTCGATAATGGC 4341 Query 2071704 CGACCA 2071709 |||| Sbjct 4340 ATACCA 4335 Score = 91.5 bits (100), Expect = 2e-12 Identities = 102/134 (76%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 2069616 AAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTG-ATGACCTCGCACGCCT 2069674 ||| || || || || ||||| ||||| ||||||||||||||| ||| |||| | | Sbjct 6283 AAACTCTCCAGACAGGACGCGACGCGTATAGATGTTGCTCGTGTATG-GCTCGATTGATT 6225 Query 2069675 CGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAGCGAGT 2069734 || ||||||| || ||||||| ||||| ||| ||||||||| | || | ||||| || Sbjct 6224 CGTTGTTGCCAAGAATCTGCGCCGTCGAGGCAGTGGGCATGGGAGCGAGAAGCAGACTGT 6165 Query 2069735 TGCGCAGGCCGTAC 2069748 |||| | |||||| Sbjct 6164 TGCGTACACCGTAC 6151 Score = 87.8 bits (96), Expect = 3e-11 Identities = 129/183 (70%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 2071812 CTCGGACGGGCAAAAGAGCGACCAGTCGCCGCCAGTCACCACGCGGCGCATAAACAGGTC 2071871 ||| | ||| || | ||||| ||| |||||| | ||||||| ||| || || || Sbjct 3364 CTCAGCCGGACACATGAGCGTCCATTCGCCGTTCGCTTCCACGCGCTTCATGAAGAGATC 3305 Query 2071872 GCACGTCCACAGGCCGTAAAAGAGATCGCGCGCCCGGTTCTCCTCCTTGCCGTGGTTCTT 2071931 |||| | | ||||||||||| || || | | || || |||||| |||||| Sbjct 3304 CGGGATCCAGACAGCATAAAAGAGATCACGTGCTCTCTGTTCTTCTTTGCCGGTGTTCTT 3245 Query 2071932 TTTCAGGTCGAGCCAGTCGACGAGGTCGGCGTGCCACGGCTCCAGGTAGCAGGCAAAGGC 2071991 |||||| |||||| || |||||||||||||||||| |||||| ||||||||| Sbjct 3244 GCGGCAGTCGAGGAAGTCGAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAGGC 3185 Query 2071992 GCC 2071994 || Sbjct 3184 ACC 3182 >seq179804 Length=4616 Score = 91.5 bits (100), Expect = 2e-12 Identities = 102/134 (76%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 2069616 AAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTG-ATGACCTCGCACGCCT 2069674 ||| || || || |||||||| ||||| ||||||||||||||| ||| |||| | | Sbjct 3626 AAACTCTCCAGACAGCACGCGACGCGTATAGATGTTGCTCGTGTATG-GCTCGATTGATT 3684 Query 2069675 CGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAGCGAGT 2069734 || ||||||| || ||||| | |||| ||| ||||||||| | || | ||||| || Sbjct 3685 CGTTGTTGCCAAGAATCTGTGCTGTCGAGGCTGTGGGCATGGGGGCAAGCAGCAGACTGT 3744 Query 2069735 TGCGCAGGCCGTAC 2069748 |||||| |||||| Sbjct 3745 TGCGCACACCGTAC 3758 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7896204688085673