Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq176294 149 5e-31 seq159113 131 1e-25 seq166919 122 7e-23 seq50026 96.9 3e-15 seq177713 95.1 9e-15 seq14326 93.3 3e-14 >seq176294 Length=1487 Score = 149 bits (164), Expect = 5e-31 Identities = 166/219 (76%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||| |||||||||||| || ||||| ||||| ||||| || || || |||||| | Sbjct 1014 CGCAACACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGCTAAGAGTGCGACCA 955 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || |||||||| ||||| | |||| ||| ||||| || || ||||||||||||||| Sbjct 954 TCTTCAAGTTGTTTTCCAGCGAAGATCAGTCTCTGCTGGTCAGGGGGAATACCCTCTTTG 895 Query 29692 TCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || ||| |||| || ||| | || | |||||| | || || || ||||| || Sbjct 894 TCCTG-AATCTTTGCCTTTACATTCTCGATGGTGTCACTTGGCTCCACCTCGAGAGTAAT 836 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || ||||| |||| ||| || || || ||||||||||| Sbjct 835 GGTCTTGCCGGTTAGGGTCTTGACGAAGATCTGCATTTT 797 Score = 100 bits (110), Expect = 2e-16 Identities = 142/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || |||||| |||| |||||| ||||||||||| || ||||| || || Sbjct 1464 CCACCACGCAGACGCAGGACCAGATGAAGGGTGGATTCTTTCTGGATGTTGTAGTCGCTC 1405 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || || || ||||| || | || | || ||||| || || ||| Sbjct 1404 AGGGTACGTCCATCCTCAAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCTGGGGGA 1345 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||||||||| || | ||| |||||| |||| | |||||| | || ||| Sbjct 1344 ATGCCCTCTTTGTCCTGGATTTTGGCTTTGACGTTTTCGATCGTGTCACTTGGCTCGACT 1285 Query 29740 TCAAGAGTTATAGTTTTGCC 29759 || || || || ||||| || Sbjct 1284 TCGAGGGTGATCGTTTTTCC 1265 >seq159113 Length=23055 Score = 131 bits (144), Expect = 1e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 |||| |||||||||||| || ||||| ||||| || || || || || |||||| | Sbjct 22298 CGCAACACCAAATGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTAAGAGTGCGACCA 22239 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || |||||||| ||||| | || | || ||||| || || ||||||||||||||| Sbjct 22238 TCTTCAAGTTGTTTTCCAGCGAAGATTAGCCTCTGCTGGTCAGGGGGAATACCCTCTTTG 22179 Query 29692 TCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || ||| |||| || ||| | || | |||||| | || || || ||||| || Sbjct 22178 TCCTG-AATCTTTGCCTTTACATTCTCGATTGTGTCACTTGGCTCCACCTCGAGAGTAAT 22120 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || ||||| || | ||| || || || ||||||||||| Sbjct 22119 GGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATTTT 22081 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || |||||| |||| ||||| ||||||||||| || ||||| || || Sbjct 23013 CCACCACGCAGACGCAGGACCAGGTGAAGAGTGGATTCTTTCTGGATGTTGTAGTCGCTC 22954 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || || |||||||| || | || | || ||||| || || ||| Sbjct 22953 AGGGTACGTCCATCCTCCAGCTGTTTGCCGGCGAAGATAAGCCTCTGCTGGTCTGGGGGA 22894 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||||||||| || | ||| |||||| |||| | |||||| | || ||| Sbjct 22893 ATGCCCTCTTTGTCCTGGATTTTGGCTTTGACGTTTTCGATCGTGTCACTTGGCTCAACT 22834 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || |||||||||||||| | ||| || || || |||||||| Sbjct 22833 TCGAGGGTGATAGTTTTGCCAGTGAGGGTCTTCACGAAAATCTGCAT 22787 Score = 104 bits (114), Expect = 2e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || |||||| |||| |||||| ||||||||||| || ||||| || || Sbjct 22785 CCACCACGCAGACGCAGGACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAGTCACTC 22726 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || || |||||||| || | || | || ||||| || || ||| Sbjct 22725 AGGGTACGTCCATCCTCCAGCTGTTTGCCGGCGAAGATAAGCCTCTGCTGGTCTGGGGGA 22666 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||||||||| || | ||| |||||| |||| | |||||| | || ||| Sbjct 22665 ATGCCCTCTTTGTCCTGGATTTTGGCTTTGACGTTTTCGATCGTGTCACTTGGCTCAACT 22606 Query 29740 TCAAGAGTTATAGTTTTGCC 29759 || || || || ||||| || Sbjct 22605 TCGAGGGTGATCGTTTTTCC 22586 >seq166919 Length=61529 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| || |||| ||||| ||||||||||| || ||||| | | Sbjct 59175 CCACCACGCAGACGAAGGACCAGGTGAAGGGTGGATTCTTTCTGGATGTTGAAGTAGCTC 59116 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || || |||||||| || | || | || |||||||| || ||| Sbjct 59115 AGGGTACGTCCATCTTCCAGCTGTTTGCCGGCGAAGATAAGCCTCTGCTGATCTGGGGGA 59056 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || |||||| |||| || | ||| |||||| | || | |||||| | || ||| Sbjct 59055 ATGCCCTCTCTGTCCTGGATTTTGGCTTTGACGTTCTCGATCGTGTCACTTGGCTCAACT 58996 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| |||||||||||||| | ||| || || || |||||||| Sbjct 58995 TCAAGAGTGATAGTTTTGCCAGTGAGGGTCTTTACGAAAATCTGCAT 58949 Score = 102 bits (112), Expect = 6e-17 Identities = 116/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || ||||| || | || | || |||||||| || ||||| |||||||| Sbjct 59332 ATCCTCCAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGATCTGGGGGAATGCCCTCTTT 59273 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | ||| |||||| | || | |||||| | || ||||||||||| || Sbjct 59272 GTCCTGGATTTTGGCTTTGACGTTCTCGATCGTGTCACTTGGCTCAACTTCAAGAGTGAT 59213 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||||||| | ||| || || || |||||||| Sbjct 59212 AGTTTTGCCAGTGACGGTCTTCACGAAAATCTGCAT 59177 >seq50026 Length=5431 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || ||||| || | || | || ||||| || || ||||| |||||||| Sbjct 832 ATCCTCCAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCTGGGGGAATGCCCTCTTT 773 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | ||| |||||| | || | |||||| | || ||||||||||| || Sbjct 772 GTCCTGGATTTTGGCTTTGACGTTCTCGATCGTGTCACTTGGCTCAACTTCAAGAGTGAT 713 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||||||| | ||| || || || |||||||| Sbjct 712 AGTTTTGCCAGTGAGGGTCTTCACGAAAATCTGCAT 677 >seq177713 Length=14691 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | ||| || ||||| | || ||||||||||| || || ||||| || || Sbjct 316 CCACCGCGCAAGCGAAGCACAAGGTGGAGCGTGGATTCCTTCTGGATGTTGTAGTCGCTC 257 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || ||| ||| || || |||||||| || | |||| || ||||| || || || Sbjct 256 AGAGTACGACCATCCTCCAGCTGTTTGCCGGCGAAGATCAGCCTCTGCTGGTCGGGAGGG 197 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | || ||| || |||| | ||||| | || ||| Sbjct 196 ATGCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTTTCGATCGTGTCGCTGGGCTCAACT 137 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || |||||||| | ||| || ||||| |||||||| Sbjct 136 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 90 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | ||| || ||||| | || |||||||||||||| || ||||| || || Sbjct 1783 CCACCGCGCAAGCGAAGCACAAGGTGGAGCGTGGATTCTTTCTGGATGTTGTAGTCGCTC 1724 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || ||| || || ||||||||||| | |||| || ||||| || || || Sbjct 1723 AGAGTACGGCCATCCTCCAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGAGGG 1664 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | || || || | || | ||||| | || ||| Sbjct 1663 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTTGGCTCAACT 1604 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || |||||||| | ||| || || || |||||||| Sbjct 1603 TCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1557 >seq14326 Length=16399 Score = 93.3 bits (102), Expect = 3e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || || || ||||| || | || | || ||||| | || ||||| |||||||| Sbjct 10367 ATCCTCCAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGCCTGGGGGAATGCCCTCTTT 10426 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | ||| |||||| | || | |||||| | || ||||||||||| || Sbjct 10427 GTCCTGGATTTTGGCTTTGACGTTCTCGATCGTGTCACTTGGCTCAACTTCAAGAGTGAT 10486 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||||||| | ||| || || || |||||||| Sbjct 10487 AGTTTTGCCAGTGAGGGTCTTCACGAAAATCTGCAT 10522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384334655700387