Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq176294 104 2e-17 seq159113 86.0 4e-12 seq118296 86.0 4e-12 seq166784 84.2 1e-11 seq37094 82.4 5e-11 >seq176294 Length=1487 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 || ||||||||||| ||||| || ||||| |||||||| ||| || ||||| | Sbjct 1014 CGCAACACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGCTAAGAGTGCGACCA 955 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || || | ||||||||| || || |||| | |||||| || | || | ||| |||||| Sbjct 954 TCTTCAAGTTGTTTTCCAGCGAAGATCAGTCTCTGCTGGTCAGGGGGAATACCCTCTTTG 895 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713 || ||| || || | |||| || | |||||| |||| ||||| || | || || Sbjct 894 TCCTGAATCTT-TGCCTTTACATTCTCGATGGTGTCACTTGGCTCCACCTCGAGAGTAAT 836 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || |||| || || || ||||||||||| Sbjct 835 GGTCTTGCCGGTTAGGGTCTTGACGAAGATCTGCAT 800 >seq159113 Length=23055 Score = 86.0 bits (94), Expect = 4e-12 Identities = 150/216 (69%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 33535 CGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCG 33594 || ||||||||||| ||||| || ||||| || ||||| ||| || ||||| | Sbjct 22298 CGCAACACCAAATGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTAAGAGTGCGACCA 22239 Query 33595 TCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTG 33654 || || | ||||||||| || || || | | |||||| || | || | ||| |||||| Sbjct 22238 TCTTCAAGTTGTTTTCCAGCGAAGATTAGCCTCTGCTGGTCAGGGGGAATACCCTCTTTG 22179 Query 33655 TCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGAT 33713 || ||| || || | |||| || | ||||| |||| ||||| || | || || Sbjct 22178 TCCTGAATCTT-TGCCTTTACATTCTCGATTGTGTCACTTGGCTCCACCTCGAGAGTAAT 22120 Query 33714 CGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || || | || || || ||||||||||| Sbjct 22119 GGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 22084 >seq118296 Length=32322 Score = 86.0 bits (94), Expect = 4e-12 Identities = 73/90 (81%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 33560 CTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAA 33619 |||| || ||||| || || |||||||| ||| | || ||||||||||| ||||| || | Sbjct 17956 CTTTCTGGATGTTATAGTCCGAGAGTGTTCGTCCATCTTCCAATTGTTTACCGGCGAAGA 18015 Query 33620 TCAAACGCTGCTGATCTTGCGGCACACCTT 33649 |||||||||||||||| | || | ||||| Sbjct 18016 TCAAACGCTGCTGATCGGGAGGGATACCTT 18045 >seq166784 Length=39261 Score = 84.2 bits (92), Expect = 1e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || || |||||||| || ||||||||||| || || |||||||| ||| Sbjct 568 CCACCACGCAGGCGCAACACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGCTC 627 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCT 33636 || || ||| | || |||| || || |||||||| ||||| | |||||| ||| Sbjct 628 AGGGTACGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCT 681 >seq37094 Length=33869 Score = 82.4 bits (90), Expect = 5e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 33560 CTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAA 33619 |||| || ||||| || || |||||||| || | || ||||||||||| ||||| || | Sbjct 25856 CTTTCTGAATGTTATAGTCCGAGAGTGTTCGCCCATCTTCCAATTGTTTACCGGCGAAGA 25797 Query 33620 TCAAACGCTGCTGATCTTGCGGCACACCTT 33649 |||||||||||||||| | || | ||||| Sbjct 25796 TCAAACGCTGCTGATCGGGAGGGATACCTT 25767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 327949226485440