Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq159113 113 1e-19 seq176294 107 5e-18 seq166919 96.9 8e-15 seq88483 95.1 3e-14 seq44755 91.5 3e-13 seq177713 87.8 4e-12 >seq159113 Length=23055 Score = 113 bits (124), Expect = 1e-19 Identities = 146/198 (74%), Gaps = 8/198 (4%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCTGACACAGTCGAA 206241 || || ||||| || ||||| ||||| | ||||| || |||| ||||| ||||| Sbjct 22802 AAGACCCTCACTGGCAAAACTATCACCCTCGAAGTTGAGCCAAGT---GACACGATCGAA 22858 Query 206242 TCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTAT 206300 || ||||| ||| || || || ||||| || ||| || ||| || || ||||| Sbjct 22859 AACGTCAAAGCCAAA-ATCCAGGACAAAGAGGGCATTCCCCCAGACCAGCAGAGGCTTAT 22917 Query 206301 CTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGA 206360 ||||||||| || ||| |||| |||||| | || || ||| |||||| |||||||||| Sbjct 22918 CTTCGCCGGCAAACAGCTGGAGGATGGACGTACCCTGAGCGACTACAACATCCAGAAAGA 22977 Query 206361 GTCTACTCTTCACCTTGT 206378 || ||||||||||| || Sbjct 22978 ATCCACTCTTCACCTGGT 22995 Score = 107 bits (118), Expect = 5e-18 Identities = 139/188 (74%), Gaps = 8/188 (4%) Strand=Plus/Plus Query 206195 CAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCTGACACAGTCGAATCAGT-AAAG 206250 |||||||||||||||| | ||||| || ||| |||||| ||||| || |||| Sbjct 22584 CAGGAAAAACGATCACCCTCGAAGTTGAGCCAAG---TGACACGATCGAAAACGTCAAAG 22640 Query 206251 CAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGA 206310 | ||| || || || ||||| || ||| || ||| || || |||||||||||||| Sbjct 22641 CCAAA-ATCCAGGACAAAGAGGGCATTCCCCCAGACCAGCAGAGGCTTATCTTCGCCGGC 22699 Query 206311 AAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTT 206370 || ||| |||| |||||| | || || || |||||| |||||||||| || |||||| Sbjct 22700 AAACAGCTGGAGGATGGACGTACCCTGAGTGACTACAACATCCAGAAAGAATCCACTCTT 22759 Query 206371 CACCTTGT 206378 || || || Sbjct 22760 CATCTGGT 22767 Score = 98.7 bits (108), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 9/230 (4%) Strand=Plus/Plus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA- 206222 |||||| ||||| || ||| || || || || || || || ||| | || ||||| Sbjct 22081 AAAATG---CAGATCTTCGTCAAGACCCTGACCGGCAAGACCATTACTCTCGAGGTGGAG 22137 Query 206223 --AAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTG 206280 |||| |||||| |||| |||||| ||||||||| || ||||| || ||| Sbjct 22138 CCAAGT---GACACAATCGAGAATGTAAAGGCAAAGATTCAGGACAAAGAGGGTATTCCC 22194 Query 206281 CCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCC 206340 || ||| || || || |||||||| ||||| || | |||||||| | ||| | | Sbjct 22195 CCTGACCAGCAGAGGCTAATCTTCGCTGGAAAACAACTTGAAGATGGTCGCACTCTTAGC 22254 Query 206341 GATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || ||||| |||| || || ||||||||||| | || ||| | ||||| Sbjct 22255 GACTACAATATCCAAAAGGAATCTACTCTTCATTTGGTGTTGCGCCTTCG 22304 >seq176294 Length=1487 Score = 107 bits (118), Expect = 5e-18 Identities = 139/188 (74%), Gaps = 8/188 (4%) Strand=Plus/Plus Query 206195 CAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCTGACACAGTCGAATCAGT-AAAG 206250 |||||||||||||||| | ||||| || ||| |||||| ||||| || |||| Sbjct 1263 CAGGAAAAACGATCACCCTCGAAGTCGAGCCAAG---TGACACGATCGAAAACGTCAAAG 1319 Query 206251 CAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGA 206310 | ||| || || || ||||| || ||| || ||| || || |||||||||||||| Sbjct 1320 CCAAA-ATCCAGGACAAAGAGGGCATTCCCCCAGACCAGCAGAGGCTTATCTTCGCCGGC 1378 Query 206311 AAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTT 206370 |||||| | || |||||| | || || ||| |||||| |||||||||| || || ||| Sbjct 1379 AAGCAGCTTGAGGATGGACGTACCCTGAGCGACTACAACATCCAGAAAGAATCCACCCTT 1438 Query 206371 CACCTTGT 206378 || || || Sbjct 1439 CATCTGGT 1446 Score = 104 bits (114), Expect = 6e-17 Identities = 162/230 (70%), Gaps = 9/230 (4%) Strand=Plus/Plus Query 206164 AAAATGTACCAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA- 206222 |||||| ||||| || ||| || || || || || || || ||| | || ||||| Sbjct 797 AAAATG---CAGATCTTCGTCAAGACCCTAACCGGCAAGACCATTACTCTCGAGGTGGAG 853 Query 206223 --AAGTTCTGACACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTG 206280 |||| ||||| |||| |||||| ||||||||| || ||||| || ||| Sbjct 854 CCAAGT---GACACCATCGAGAATGTAAAGGCAAAGATTCAGGACAAAGAGGGTATTCCC 910 Query 206281 CCGGACGCTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCC 206340 || ||| || ||||| |||||||| ||||| || | |||||||| | ||| | | Sbjct 911 CCTGACCAGCAGAGACTGATCTTCGCTGGAAAACAACTTGAAGATGGTCGCACTCTTAGC 970 Query 206341 GATTACAACGTCCAGAAAGAGTCTACTCTTCACCTTGTTTTGAGACTTCG 206390 || |||||| |||| || || ||||||||||| | || ||| | ||||| Sbjct 971 GACTACAACATCCAAAAGGAATCTACTCTTCATTTGGTGTTGCGCCTTCG 1020 >seq166919 Length=61529 Score = 96.9 bits (106), Expect = 8e-15 Identities = 152/211 (72%), Gaps = 10/211 (5%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAA-ACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTC 206228 ||||| ||| | ||| || ||||| || ||||| |||||| | ||||| || |||| Sbjct 58952 CAGAT-TTTCGTAAAGACCCTCACTGGCAAAACTATCACTCTTGAAGTTGAGCCAAGT-- 59008 Query 206229 TGACACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACG 206287 ||||| |||| || ||||| ||| || || || | ||| || ||| || || Sbjct 59009 -GACACGATCGAGAACGTCAAAGCCAAA-ATCCAGGACAGAGAGGGCATTCCCCCAGATC 59066 Query 206288 CTCAAAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACA 206347 || || |||||||||||||| || ||| ||||||||||| | || || | | | || Sbjct 59067 AGCAGAGGCTTATCTTCGCCGGCAAACAGCTGGAAGATGGACGTACCCTGAGCTACTTCA 59126 Query 206348 ACGTCCAGAAAGAGTCTACTCTTCACCTTGT 206378 || |||||||||| || || |||||||| || Sbjct 59127 ACATCCAGAAAGAATCCACCCTTCACCTGGT 59157 >seq88483 Length=20907 Score = 95.1 bits (104), Expect = 3e-14 Identities = 141/200 (71%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||||| || || ||||| || ||||| | || || ||| ||| Sbjct 644 CAGATTTTTGTGAAAACACTTACTGGAAAGACTATCACACTCGAGGTCGAACCCAGTGAT 585 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || ||||| || ||| ||||| || || || ||||| || || ||| || Sbjct 584 ACCATCGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCCGACCAGCAG 525 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 || || ||||||||||| || ||| |||| ||||| | ||| || ||| |||||| || Sbjct 524 AGGCTGATCTTCGCCGGCAAACAGCTGGAGGATGGTCGTACTCTGAGCGACTACAACATC 465 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 ||||| ||||||||||| || Sbjct 464 CAGAAGGAGTCTACTCTGCA 445 >seq44755 Length=507 Score = 91.5 bits (100), Expect = 3e-13 Identities = 137/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| || || || || || ||||| ||||||| || ||||| |||| Sbjct 409 AAAACCCTGACTGGCAAGACCATCACCCTGGAAGTTGAGCCCAGCGACACCATCGAGAAC 350 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || || ||||| || || ||| || || || |||||| Sbjct 349 GTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCCGACCAGCAGAGGCTGATCTTC 290 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| |||||| |||| ||||| | ||| || ||| |||||| ||||||| || || Sbjct 289 GCCGGCAAGCAGCTGGAGGATGGTCGTACTCTGAGCGACTACAACATCCAGAAGGAATCC 230 Query 206365 ACTCTTCACCTTGTT 206379 || || ||||||||| Sbjct 229 ACGCTCCACCTTGTT 215 >seq177713 Length=14691 Score = 87.8 bits (96), Expect = 4e-12 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || || || || || || ||||| ||||||| || ||| Sbjct 93 CAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTTGAGCCCAGCGAC 152 Query 206233 ACAGTCGAATCAGT-AAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCA 206291 || ||||| || ||||| || ||| || || || ||||| || || ||| || Sbjct 153 ACGATCGAAAACGTGAAAGCCAA-GATCCAGGACAAGGAAGGCATCCCTCCCGACCAGCA 211 Query 206292 AAGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGT 206351 || || ||||||||||| || ||| |||| ||||| | ||| || ||| |||||| | Sbjct 212 GAGGCTGATCTTCGCCGGCAAACAGCTGGAGGATGGTCGTACTCTGAGCGACTACAACAT 271 Query 206352 CCAGAAAGAGTCTACTCTTCACCTTGT 206378 |||||| || || || || |||||||| Sbjct 272 CCAGAAGGAATCCACGCTCCACCTTGT 298 Score = 86.0 bits (94), Expect = 1e-11 Identities = 138/197 (70%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCTGACACAGTCGAA 206241 || || || || || || || ||||| ||||||| || ||| ||||| |||| Sbjct 1344 AAGACCCTGACTGGCAAGACCATCACCCTGGAAGTTGAGCCAAGC---GACACGATCGAG 1400 Query 206242 TCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATC 206301 || ||| ||||| || || || ||||| || || ||| || || || ||| Sbjct 1401 AACGTGAAGGCCAAGATCCAGGACAAGGAAGGCATCCCTCCCGACCAGCAGAGGCTGATC 1460 Query 206302 TTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAG 206361 |||||||| || ||| |||| ||||| | ||| || ||| |||||| ||||||| || Sbjct 1461 TTCGCCGGCAAACAGCTGGAGGATGGCCGTACTCTGAGCGACTACAACATCCAGAAGGAA 1520 Query 206362 TCTACTCTTCACCTTGT 206378 ||||| || |||||||| Sbjct 1521 TCTACGCTCCACCTTGT 1537 Score = 84.2 bits (92), Expect = 5e-11 Identities = 129/184 (70%), Gaps = 0/184 (0%) Strand=Plus/Plus Query 206195 CAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAAA 206254 |||| || || ||||| ||||||| || ||||| |||| || ||| | Sbjct 1126 CAGGCAAGACCATCACCCTGGAAGTTGAGCCCAGCGACACGATCGAGAACGTGAAGGCCA 1185 Query 206255 AGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAGC 206314 |||| || || || ||||| || || ||| || || || ||||||||||| || | Sbjct 1186 AGATCCAGGATAAGGAAGGCATCCCTCCCGACCAGCAGAGGCTGATCTTCGCCGGCAAAC 1245 Query 206315 AGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCACC 206374 || |||| ||||| | ||| || ||| |||||| ||||||| || || || ||||||| Sbjct 1246 AGCTGGAGGATGGTCGTACTCTGAGCGACTACAACATCCAGAAGGAATCGACGCTTCACC 1305 Query 206375 TTGT 206378 |||| Sbjct 1306 TTGT 1309 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178967926321847