Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq176294 116 3e-21 seq159113 113 4e-20 seq166919 91.5 1e-13 >seq176294 Length=1487 Score = 116 bits (128), Expect = 3e-21 Identities = 157/216 (73%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || ||||| | || || || || ||||||| || | || || |||| || || ||| Sbjct 797 AAAATGCAGATCTTCGTCAAGACCCTAACCGGCAAGACCATTACTCTCGAGGTGGA-GCC 855 Query 25232 AAC-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 || || || |||||| | ||||| ||| ||| || ||||||||||| || || || Sbjct 856 AAGTGACACCATCGAGAATGTAAAGGCAAAGATTCAGGACAAAGAGGGTATTCCCCCTGA 915 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 ||||| ||||| || | || || |||||||| ||||||| | | | | | ||||| || Sbjct 916 CCAGCAGAGACTGATCTTCGCTGGAAAACAACTTGAAGATGGTCGCACTCTTAGCGACTA 975 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 ||| || ||||| ||||| || ||||||| ||||| Sbjct 976 CAACATCCAAAAGGAATCTACTCTTCATTTGGTGTT 1011 Score = 98.7 bits (108), Expect = 9e-16 Identities = 130/178 (73%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 25202 GGAAAATCGATCACGATCGAAGTCGAAGCCAAC-GATACTATCGAGCAAGTAAAACAAAA 25260 |||||| ||||||| |||||||||| ||||| || || ||||| | || ||| || Sbjct 1265 GGAAAAACGATCACCCTCGAAGTCGA-GCCAAGTGACACGATCGAAAACGTCAAAGCCAA 1323 Query 25261 AATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACA 25320 ||| || |||||||| || || || || ||||| || || || | || |||||| || Sbjct 1324 AATCCAGGACAAAGAGGGCATTCCCCCAGACCAGCAGAGGCTTATCTTCGCCGGCAAGCA 1383 Query 25321 ACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCAT 25378 || || |||| | | | ||||| ||||| || || |||||||||||| ||||| Sbjct 1384 GCTTGAGGATGGACGTACCCTGAGCGACTACAACATCCAGAAAGAATCCACCCTTCAT 1441 >seq159113 Length=23055 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCC 25231 || ||||| | || || || || | ||||| || | || || |||| || || ||| Sbjct 22081 AAAATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATTACTCTCGAGGTGGA-GCC 22139 Query 25232 AAC-GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 || || || |||||| | ||||| ||| ||| || ||||||||||| || || || Sbjct 22140 AAGTGACACAATCGAGAATGTAAAGGCAAAGATTCAGGACAAAGAGGGTATTCCCCCTGA 22199 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 ||||| || || || | || || |||||||| ||||||| | | | | | ||||| || Sbjct 22200 CCAGCAGAGGCTAATCTTCGCTGGAAAACAACTTGAAGATGGTCGCACTCTTAGCGACTA 22259 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTT 25386 |||||| ||||| ||||| || ||||||| ||||| Sbjct 22260 CAATATCCAAAAGGAATCTACTCTTCATTTGGTGTT 22295 Score = 89.7 bits (98), Expect = 5e-13 Identities = 128/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 25202 GGAAAATCGATCACGATCGAAGTCGAAGCCAAC-GATACTATCGAGCAAGTAAAACAAAA 25260 |||||| ||||||| ||||||| || ||||| || || ||||| | || ||| || Sbjct 22586 GGAAAAACGATCACCCTCGAAGTTGA-GCCAAGTGACACGATCGAAAACGTCAAAGCCAA 22644 Query 25261 AATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACA 25320 ||| || |||||||| || || || || ||||| || || || | || ||||||||| Sbjct 22645 AATCCAGGACAAAGAGGGCATTCCCCCAGACCAGCAGAGGCTTATCTTCGCCGGCAAACA 22704 Query 25321 ACTCGAAGATGATAGAAATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCAT 25378 || || |||| | | | || || ||||| || || ||||||||||| ||||| Sbjct 22705 GCTGGAGGATGGACGTACCCTGAGTGACTACAACATCCAGAAAGAATCCACTCTTCAT 22762 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || || || | || || ||| | ||||| ||||||| || ||||| Sbjct 22787 ATGCAGATTTTCGTGAAGACCCTCACTGGCAAAACTATCACCCTCGAAGTTGA-GCCAAG 22845 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || ||||| | || ||| ||||| || |||||||| || || || || || Sbjct 22846 TGACACGATCGAAAACGTCAAAGCCAAAATCCAGGACAAAGAGGGCATTCCCCCAGACCA 22905 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || || || | || ||||||||| || || |||| | | | ||||| ||||| Sbjct 22906 GCAGAGGCTTATCTTCGCCGGCAAACAGCTGGAGGATGGACGTACCCTGAGCGACTACAA 22965 Query 25354 TATTCAAAAAGAATCCACCATTCA 25377 || || ||||||||||| |||| Sbjct 22966 CATCCAGAAAGAATCCACTCTTCA 22989 >seq166919 Length=61529 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || ||||| || | || || ||| | ||||| | ||||| || ||||| Sbjct 58949 ATGCAGATTTTCGTAAAGACCCTCACTGGCAAAACTATCACTCTTGAAGTTGA-GCCAAG 59007 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || |||||| | || ||| ||||| || | |||||| || || || ||||| Sbjct 59008 TGACACGATCGAGAACGTCAAAGCCAAAATCCAGGACAGAGAGGGCATTCCCCCAGATCA 59067 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 ||| || || || | || ||||||||| || ||||||| | | | ||| | | ||| Sbjct 59068 GCAGAGGCTTATCTTCGCCGGCAAACAGCTGGAAGATGGACGTACCCTGAGCTACTTCAA 59127 Query 25354 TATTCAAAAAGAATCCACCATTCA 25377 || || |||||||||||| |||| Sbjct 59128 CATCCAGAAAGAATCCACCCTTCA 59151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 444046163742240