Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq18922 141 1e-27 seq172076 125 1e-22 seq44860 109 8e-18 seq60558 100 4e-15 seq179804 86.0 9e-11 >seq18922 Length=6667 Score = 141 bits (156), Expect = 1e-27 Identities = 172/229 (75%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 1456085 ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGA 1456144 ||||||| ||||||||| || |||| | || | | ||||| |||||||| || | Sbjct 1912 ACCTCTTCAACGCCATCGAAACCATGCCCTGCGTTAAGCGGAAGGCGGACTGGGCCATCA 1971 Query 1456145 AGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GT 1456203 ||||||||||| | || | |||| | || |||||||| | ||| || || || || Sbjct 1972 AGTGGATCAACGATGACG-CCTCTTCG-TTCGCCGAGCGAGTGATCGCGTTCGCTGCCGT 2029 Query 1456204 CGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCT 1456263 ||| |||||||||||||||||| ||| ||||||||| ||||||||||||||||| | Sbjct 2030 CGAAGGCATCTTTTTCTCGGGCTCATTCGCCGCCATCTTCTGGCTCAAGAAGCGCGGTAT 2089 Query 1456264 CATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGAAGT 1456312 |||||| || | || || |||||||| || |||||| | || || || Sbjct 2090 CATGCCAGGGC-TCACGTTCAGCAACGAGTTGATCAGTAGGGATGAGGT 2137 Score = 91.5 bits (100), Expect = 2e-12 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 ||||| |||||| || || || ||| ||||| |||| || || ||||| Sbjct 1097 GAGCCACTGCTGAAGGACAATCCCCGCCGGTTTGTGGTGTTTCCTATAAAATACCATGAC 1156 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || ||| |||||||| ||||||||||| ||||| || ||||| || ||||| || || || Sbjct 1157 ATCTGGCAAATGTAC-AAAAAGGCCGAAGCCTCTTTCTGGACTGCAGAGGAAGTGGATCT 1215 Query 1455836 CGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 ||| || |||||||| |||| | || || ||||| || ||||| || Sbjct 1216 ATCGAAAGACCTGGGCCACTGGGATACGCTAAAAGATGAGGAGCGGCACTTCATTTCTCA 1275 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGT 1455932 ||| || | | || ||||| || ||||| |||||||| Sbjct 1276 CGT-CTTGGCGTTCTTCGCGGCAAGCGACGGCATCGT 1311 >seq172076 Length=28491 Score = 125 bits (138), Expect = 1e-22 Identities = 161/217 (74%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 1456085 ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGA 1456144 ||||||| ||||||||| || |||| | || | | ||||| |||||||| || | Sbjct 2590 ACCTCTTCAACGCCATCGAAACTATGCCCTGCGTCAAGCGGAAGGCGGACTGGGCCATCA 2531 Query 1456145 AGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-GT 1456203 ||||||||||| | || | |||| | || |||||||| | ||| || || || || Sbjct 2530 AGTGGATCAACGACGACG-CCTCTTCG-TTCGCCGAGCGAGTGATCGCGTTCGCTGCCGT 2473 Query 1456204 CGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCCT 1456263 ||| |||||||||||||||||| || |||||| || |||||||||||||| || | Sbjct 2472 CGAAGGCATCTTTTTCTCGGGCTCGTTTGCCGCCATTTTCTGGCTCAAGAAGCGTGGTAT 2413 Query 1456264 CATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAG 1456300 |||||| || | || || |||||||| || ||||| Sbjct 2412 CATGCCAGGGC-TCACGTTCAGCAACGAGTTGATCAG 2377 Score = 91.5 bits (100), Expect = 2e-12 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 1455716 GAGCCGCTGCTGCGCGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGG 1455775 ||||| |||||| || || || ||| ||||| |||| || || ||||| Sbjct 3564 GAGCCACTGCTGAAGGACAATCCCCGCCGGTTTGTGGTGTTTCCTATTAAATACCATGAC 3505 Query 1455776 ATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCT 1455835 || ||| |||||||| ||||||||||| ||||| || ||||| || ||||| || || || Sbjct 3504 ATCTGGCAAATGTAC-AAAAAGGCCGAAGCCTCTTTCTGGACTGCAGAGGAAGTGGATCT 3446 Query 1455836 CGGCGCCGACACGGTCCACTGGGTGTCGCTGAGCGACGACGAGCGCCATTTCATCAAGCA 1455895 ||| || |||||||| || | | || |||||||| || ||||| || Sbjct 3445 ATCGAAAGACCTGGGCCACTGGGATACGTTAAAAGATGACGAGCGACACTTCATTTCTCA 3386 Query 1455896 CGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGT 1455932 ||| || | | || ||||| || ||||| |||||||| Sbjct 3385 CGT-CTTGGCGTTCTTCGCGGCAAGCGACGGCATCGT 3350 >seq44860 Length=53707 Score = 109 bits (120), Expect = 8e-18 Identities = 105/132 (80%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 262097 TGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGAC 262156 |||| |||||| ||| ||| || |||||||||| || ||||||||| ||||||||||| Sbjct 4335 TGGTATGCCATTATCGAGGCGCAAGTCGAGACCGGAACTCCCTACATGCTCTACAAGGAC 4394 Query 262157 GCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAACCTGTG 262215 ||| ||||| || |||||||| |||||| ||||||||| | || | |||| |||| Sbjct 4395 GCCTGCAACCGGAAGAGCAACCAACAGAACTTGGGCACCATCA-AGTGCAGCAACTTGTG 4453 Query 262216 CACCGAGATCGT 262227 ||| ||||| || Sbjct 4454 CACGGAGATTGT 4465 Score = 86.0 bits (94), Expect = 9e-11 Identities = 89/114 (78%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 262934 TGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCAACACCGAGGCGT 262993 |||| | || | ||||||||| ||| ||||| ||||||| || ||||||| ||| | Sbjct 6171 TGCTTCTCGCTCCCATGCCCACTGCCTCGACGGCGCAGATTCTTGGCAACAACGAATCAA 6230 Query 262994 TCGAGGTCAT-CACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGCGACTTT 263046 ||||| ||| ||||||||||||||| ||||| ||||| || || || || ||| Sbjct 6231 TCGAGC-CATACACGAGCAACATCTATACGCGTCGCGTCCTGTCTGGAGAGTTT 6283 >seq60558 Length=5495 Score = 100 bits (110), Expect = 4e-15 Identities = 103/132 (78%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 262097 TGGTCGGCCATTGTCGCGGCCCATATCGAGACCGGCACGCCCTACATGGTCTACAAGGAC 262156 |||| ||||| ||| |||||| | || || ||||||||||| ||| | ||||||||| Sbjct 3622 TGGTACGCCATCATCGAGGCCCAAGTAGAAACAGGCACGCCCTATATGCTGTACAAGGAC 3681 Query 262157 GCCGTCAACCTGACCAGCAACCAGCAGAACCTGGGCACCACGACAGAG-GCCAACCTGTG 262215 ||| ||||| || |||||||| |||||| ||||||||| | || | ||||||||| Sbjct 3682 GCCTGCAACCGGAAGAGCAACCAACAGAACTTGGGCACCATCA-AGTGCAGCAACCTGTG 3740 Query 262216 CACCGAGATCGT 262227 ||| ||||| || Sbjct 3741 CACGGAGATTGT 3752 >seq179804 Length=4616 Score = 86.0 bits (94), Expect = 9e-11 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 262922 TGCGCAACTCGTTGCTCGTGGCGCTCATGCCCACGGCCACGACGTCGCAGATCCTGGGCA 262981 |||||||| |||| | || | ||||||||| ||| |||| | ||||| || |||| Sbjct 3750 TGCGCAACAGTCTGCTGCTTGCCCCCATGCCCACAGCCTCGACAGCACAGATTCTTGGCA 3691 Query 262982 ACACCGAGGCGTTCGAGGTCAT-CACGAGCAACATCTACACGCGCCGCGTGCTCTCGGGC 263040 ||| ||| | ||||| ||| ||||||||||||||| ||||| |||||||| || || Sbjct 3690 ACAACGAATCAATCGAGC-CATACACGAGCAACATCTATACGCGTCGCGTGCTGTCTGGA 3632 Query 263041 GACTTT 263046 || ||| Sbjct 3631 GAGTTT 3626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7159638998557934