Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq172076 104 3e-17 seq18922 104 3e-17 >seq172076 Length=28491 Score = 104 bits (114), Expect = 3e-17 Identities = 159/226 (70%), Gaps = 3/226 (1%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| || || || || ||||| || ||||| || ||||| | ||||||||| | Sbjct 2366 CCTCATCCCTGCTGATCAACTCGTTGCTGAACGTGAGCCCTGGCATGATACCACGCTTCT 2425 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| || ||||| ||||| || || || || ||||||||||| || || || || | Sbjct 2426 TGAGCCAGAAAATGGCGGCAAACGAGCCCGAGAAAAAGATGCCTTCGACGGCAGCGAACG 2485 Query 39759 CAACAAGTCTCTCTCCG---TAACTTGTATCATTATGTATCCACTTCTGTGCCCAATCAG 39815 | | | || ||| || || | || | | |||||||| ||||| || | Sbjct 2486 CGATCACTCGCTCGGCGAACGAAGAGGCGTCGTCGTTGATCCACTTGATGGCCCAGTCCG 2545 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA 39861 | ||| ||| || || ||||| ||||| || || || ||||| || Sbjct 2546 CCTTCCGCTTGACGCAGGGCATAGTTTCGATGGCGTTGAAGAGGTA 2591 Score = 96.9 bits (106), Expect = 5e-15 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 ||||||||||||||| |||||||| ||||| || ||||||||||| || |||||||| || Sbjct 1233 CATAACTCCCATTTTCTGGTATTCGCCAACACGCTTCTCGAAAAAGTTCGTTTTGCCCTC 1292 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATT 39405 | || || ||||||||||| || || || || Sbjct 1293 GAGCGAAATGTTTTCCATGAAGTCGAAGGGGTT 1325 >seq18922 Length=6667 Score = 104 bits (114), Expect = 3e-17 Identities = 159/226 (70%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| ||||| || || ||||| || ||||| || ||||| | ||| ||||| | Sbjct 2136 CCTCATCCCTACTGATCAACTCGTTGCTGAACGTGAGCCCTGGCATGATACCGCGCTTCT 2077 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 ||||||| || ||||| || || || || || || ||||||||||| || || || || | Sbjct 2076 TGAGCCAGAAGATGGCGGCGAATGAGCCCGAGAAAAAGATGCCTTCGACGGCAGCGAACG 2017 Query 39759 CAACAAGTCTCTCTCCG---TAACTTGTATCATTATGTATCCACTTCTGTGCCCAATCAG 39815 | | | || ||| || || | |||| | |||||||| ||||| || | Sbjct 2016 CGATCACTCGCTCGGCGAACGAAGAGGCGTCATCGTTGATCCACTTGATGGCCCAGTCCG 1957 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATA 39861 | ||| ||| || || ||||| ||||| || || || ||||| || Sbjct 1956 CCTTCCGCTTAACGCAGGGCATGGTTTCGATGGCGTTGAAGAGGTA 1911 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 39313 CATAACTCCCATTTTTTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTC 39372 ||||||||||||||| |||||||| || || || ||||||||||| || |||||||| || Sbjct 4439 CATAACTCCCATTTTCTGGTATTCGCCGACACGCTTCTCGAAAAAGTTCGTTTTGCCCTC 4380 Query 39373 CAATGATATATTTTCCATGAAATCAAACGGATT 39405 | || || ||||||||||| || || || || Sbjct 4379 GAGCGAAATGTTTTCCATGAAGTCGAATGGGTT 4347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685291069671480