Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq172076 131 1e-25 seq18922 118 8e-22 >seq172076 Length=28491 Score = 131 bits (144), Expect = 1e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 43698 GGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGG 43757 ||||||| |||||||| ||| |||| |||||||| ||||||||||||||||| || | | Sbjct 3536 GGTTTGTGGTGTTTCCTATTAAATACCATGACATCTGGCAAATGTACAAAAAGGCCGAAG 3477 Query 43758 CGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCAT 43817 | || || ||||| ||||| ||||| ||| | | |||||| | | || ||| | | | Sbjct 3476 CCTCTTTCTGGACTGCAGAGGAAGTGGATCTATCGAAAGACCTGGGCCACTGGGATACGT 3417 Query 43818 TAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACG 43877 ||||| | || ||| || || ||| || |||||||| || || || ||||||| Sbjct 3416 TAAAAGATGACGAGCGACACTTCATTTCTCACGTCTTGGCGTTCTTCGCGGCAAGCGACG 3357 Query 43878 GGATAGTCAATGAAAATTTGGTTAG 43902 | || ||||| |||||| | || || Sbjct 3356 GCATCGTCAACGAAAATCTAGTAAG 3332 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 43914 AAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATA 43973 ||||||| || | | ||||| || ||||| ||||| | || || |||| ||||| | Sbjct 3018 AAGAAGTCCAGGTGACGGAAGCTCGCTGTTTCTATGGCTACCAGATCGCCACCGAAAACA 2959 Query 43974 TTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 | || ||||||||||||||||| || || ||||| |||||||| || Sbjct 2958 TCCACTCGGAAATGTACAGTCTACTCATCGATACCTACATCAAGGA 2913 >seq18922 Length=6667 Score = 118 bits (130), Expect = 8e-22 Identities = 149/205 (73%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 43698 GGTTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGG 43757 ||||||| |||||||| || |||| |||||||| ||||||||||||||||| || | | Sbjct 1125 GGTTTGTGGTGTTTCCTATAAAATACCATGACATCTGGCAAATGTACAAAAAGGCCGAAG 1184 Query 43758 CGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCAT 43817 | || || ||||| ||||| ||||| ||| | | |||||| | | || ||| | | Sbjct 1185 CCTCTTTCTGGACTGCAGAGGAAGTGGATCTATCGAAAGACCTGGGCCACTGGGATACGC 1244 Query 43818 TAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACG 43877 ||||| | || || || || ||| || |||||||| || || || ||||||| Sbjct 1245 TAAAAGATGAGGAGCGGCACTTCATTTCTCACGTCTTGGCGTTCTTCGCGGCAAGCGACG 1304 Query 43878 GGATAGTCAATGAAAATTTGGTTAG 43902 | || ||||| |||||| | || || Sbjct 1305 GCATCGTCAACGAAAATCTAGTAAG 1329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396543357434035