Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq60558 91.5 2e-13 seq18922 89.7 6e-13 seq172076 86.0 7e-12 >seq60558 Length=5495 Score = 91.5 bits (100), Expect = 2e-13 Identities = 145/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Plus Query 104616 TCTATCTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAG 104675 |||| || |||||||||||||| || ||| | || ||||| || | || ||| | Sbjct 2160 TCTACCTCGAGCCATGGCACGCCGACATCTTTGATTTCCTCGACTGCCGCAAGAACACCG 2219 Query 104676 GTGACGAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCA 104735 | | |||||| ||| || |||||||| | || ||||||| || |||||||||| Sbjct 2220 GCAAGGAGGAGCAGCGAGCACGTGATCTCTTTTATGCGGTCTGGATCCCGGATCTCTTCA 2279 Query 104736 TGAAGAGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTC 104795 ||||| | ||||||| || ||| | ||| | ||| | ||||| | || || || | Sbjct 2280 TGAAGCGCGTTGAGGCGAACGGCGAGTGGACGCTCATGTGTCCGGCGGAGTGTCCAGGGC 2339 Query 104796 TCTCCGATGCCGTGGGTGAGGAGTTTGA 104823 || |||| ||| ||||||||||| Sbjct 2340 TCGATGATGTGTGGGGAGAGGAGTTTGA 2367 >seq18922 Length=6667 Score = 89.7 bits (98), Expect = 6e-13 Identities = 156/225 (69%), Gaps = 4/225 (2%) Strand=Plus/Plus Query 94714 CTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 94773 ||||| | |||||| |||| | || || || | ||| ||||| ||||| || ||| Sbjct 1914 CTCTTCAACGCCATCGAAACCATGCCCTGCGTTAAGCGGAAGGCGGACTGGGCCATCAAG 1973 Query 94774 TGGTTTGATACAAAGTCGCGT--TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTG 94831 ||| | | | | | ||| | || || || |||||| | |||| || || || | Sbjct 1974 TGGATCAA--CGATGACGCCTCTTCGTTCGCCGAGCGAGTGATCGCGTTCGCTGCCGTCG 2031 Query 94832 AGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCA 94891 | || ||||| ||||| || || ||| ||| || | |||||||||||||| ||| ||| Sbjct 2032 AAGGCATCTTTTTCTCGGGCTCATTCGCCGCCATCTTCTGGCTCAAGAAGCGCGGTATCA 2091 Query 94892 TGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 94936 ||||||| ||| ||| ||||||| | ||| | | || |||| Sbjct 2092 TGCCAGGGCTCACGTTCAGCAACGAGTTGATCAGTAGGGATGAGG 2136 >seq172076 Length=28491 Score = 86.0 bits (94), Expect = 7e-12 Identities = 147/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 94714 CTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTATGAAG 94773 ||||| | |||||| |||| | || || | | ||| ||||| ||||| || ||| Sbjct 2588 CTCTTCAACGCCATCGAAACTATGCCCTGCGTCAAGCGGAAGGCGGACTGGGCCATCAAG 2529 Query 94774 TGGTTTGAT-ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGA 94832 ||| | | || | | | | ||| || || |||||| | |||| || || || || Sbjct 2528 TGGATCAACGACGACGCCTC-TTCGTTCGCCGAGCGAGTGATCGCGTTCGCTGCCGTCGA 2470 Query 94833 GGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCAT 94892 || ||||| ||||| || || || ||| |||| |||||||||||||| ||| |||| Sbjct 2469 AGGCATCTTTTTCTCGGGCTCGTTTGCCGCCATTTTCTGGCTCAAGAAGCGTGGTATCAT 2410 Query 94893 GCCAGGTCTCTGCTTCTCCAACGAGCTTATC 94923 |||||| ||| ||| ||||||| | ||| Sbjct 2409 GCCAGGGCTCACGTTCAGCAACGAGTTGATC 2379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581887169780680