Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq44860 95.1 1e-14 seq60558 93.3 5e-14 seq172076 86.0 7e-12 >seq44860 Length=53707 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 79105 ATTTCTGTGCACAAATTAGACGACTTGATGGTGCCGATGTTCTTCTGGTTGCTCTTCTCG 79164 || || |||||||| || ||||||||||||| | ||||| |||||||||||| | Sbjct 4462 ATCTCCGTGCACAAGTTGCTGCACTTGATGGTGCCCAAGTTCTGTTGGTTGCTCTTCCGG 4403 Query 79165 TTACAGGCGTCCTTGTAGCACATGTACGGCGTCCCGGTCTCAACCTG 79211 || ||||||||||||||| |||||| || || |||||||| || || Sbjct 4402 TTGCAGGCGTCCTTGTAGAGCATGTAGGGAGTTCCGGTCTCGACTTG 4356 Score = 82.4 bits (90), Expect = 8e-11 Identities = 150/215 (70%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 79305 CTCCCCATAGA-CATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCT 79363 ||||||| | | ||||| || ||||| ||||| ||| ||||| || ||| || Sbjct 3392 CTCCCCACACATCATCGAGC---CCCGGACACTCAGCCGGACACATGAGCGTCCATTCGC 3336 Query 79364 CGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGC 79423 ||| | || || || ||||||||| ||||||||||| | || ||||| || | Sbjct 3335 CGTTCGCTTCCACGCGCTTCATGAAGAGATCCGGGATCCAGACAGCATAAAAGAGATCAC 3276 Query 79424 GGCAACGCATCTCCTCGTCGCCCTGGTTCAGACG-CAGCTCGAGAAAGTCCATGATGTCG 79482 | | | || || | ||| |||| || ||| ||||| ||||| | ||||||| Sbjct 3275 GTGCTCTCTGTTCTTCTTTGCCGGTGTTCTTGCGGCAG-TCGAGGAAGTCGAAGATGTCG 3217 Query 79483 GCGTGCCACGGCTCCAGATAGATGGCGAACGAACC 79517 |||||||||||||| || |||||||| || | ||| Sbjct 3216 GCGTGCCACGGCTCGAGGTAGATGGCAAAGGCACC 3182 >seq60558 Length=5495 Score = 93.3 bits (102), Expect = 5e-14 Identities = 129/178 (72%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 19487 GGCTCGTTCGCCATCTACCTCGAGCCATGGCACGCGGACGTCATGGATTTCCTCGAACTG 19546 ||| |||| |||||||||||||||||||||||||| ||| || | |||||||||| |||| Sbjct 2147 GGCGCGTTTGCCATCTACCTCGAGCCATGGCACGCCGACATCTTTGATTTCCTCG-ACTG 2205 Query 19547 -CGCCTGAACCAGGGTGACGAGGAGATGCGCTGTCGCGACCTCTTCACGGCCTTGTGGAT 19605 ||| |||| || | |||||| ||| || || ||||| || | ||||| Sbjct 2206 CCGCAAGAACACCGGCAAGGAGGAGCAGCGAGCACGTGATCTCTTTTATGCGGTCTGGAT 2265 Query 19606 TCCGGACCTATTCATGGAGAAGGTTGAGAAGGACGAAGAATGGCACCTGATGTGCCCG 19663 ||||| || |||||| || |||||| | ||| || ||| || ||||| ||| Sbjct 2266 CCCGGATCTCTTCATGAAGCGCGTTGAGGCGAACGGCGAGTGGACGCTCATGTGTCCG 2323 Score = 93.3 bits (102), Expect = 5e-14 Identities = 150/211 (71%), Gaps = 6/211 (3%) Strand=Plus/Minus Query 79305 CTCCCCATAGA-CATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCT 79363 ||||||| | | ||||| || || || ||||| ||| ||||| || ||| || Sbjct 2357 CTCCCCACACATCATCGAGC---CCTGGACACTCCGCCGGACACATGAGCGTCCACTCGC 2301 Query 79364 CGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGTGAAGAGGTCGC 79423 ||| | |||||| || ||||||||| ||||||||||| | || ||||| || | Sbjct 2300 CGTTCGCCTCAACGCGCTTCATGAAGAGATCCGGGATCCAGACCGCATAAAAGAGATCAC 2241 Query 79424 GGCAACGCATCTCCTCGTCGCCCTGGTTCAGACG-CAGCTCGAGAAAGTCCATGATGTCG 79482 | ||| |||||| | ||| |||| || ||| ||||| || || | ||||||| Sbjct 2240 GTGCTCGCTGCTCCTCCTTGCCGGTGTTCTTGCGGCAG-TCGAGGAAATCAAAGATGTCG 2182 Query 79483 GCGTGCCACGGCTCCAGATAGATGGCGAACG 79513 |||||||| ||||| || |||||||| |||| Sbjct 2181 GCGTGCCATGGCTCGAGGTAGATGGCAAACG 2151 >seq172076 Length=28491 Score = 86.0 bits (94), Expect = 7e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 60002 CGTGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTGCTATTTTCTGGCTCAAAAAGCGTGG 60061 ||| ||||| ||||| ||||| |||||||| || |||||||||||||| |||||||| Sbjct 2475 CGTCGAAGGCATCTTTTTCTCGGGCTCGTTTGCCGCCATTTTCTGGCTCAAGAAGCGTGG 2416 Query 60062 CCTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 ||||||| || || | ||| ||||||| |||| | |||| |||| Sbjct 2415 TATCATGCCAGGGCTCACGTTCAGCAACGAGTTGATCAGCAGGGATGAGG 2366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547232976100080