Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq120434 89.7 6e-13 seq60558 89.7 6e-13 seq44860 86.0 7e-12 seq59486 84.2 2e-11 >seq120434 Length=32248 Score = 89.7 bits (98), Expect = 6e-13 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 152935 GTGGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACGCGTTGCGG 152994 ||||| || || |||||| || | || |||| ||| ||||||||||| | ||| | | | Sbjct 24045 GTGGCCTCGCGCACATTGAGCAGTTTACCCCTGAGCGGAAACACGCCATA-GCGATCCCG 23987 Query 152995 CC-TACAACGCTCAGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGTGATAAT 153053 || ||| || | || || || | || || | || |||||||| ||||| |||| ||| Sbjct 23986 CCCTACCACACCCAATCCAGCCACGGCCAGCGTCTTGGCCGAGTCTCCCTCTGTGAGAAT 23927 Query 153054 AAGCGTACAGTCGTGAGACCGATGAGTACCGGCCCAGTTGGCGTCGTCAAGCTTGGGGAT 153113 ||||| ||| | ||| | || ||||| |||||||||||| ||||| ||||| Sbjct 23926 GAGCGTGCAGCCCGCAGAGTTCTTGGTGCCGGCGTCGTTGGCGTCGTCCAGCTTCGGGAT 23867 Query 153114 TCC 153116 || Sbjct 23866 GCC 23864 >seq60558 Length=5495 Score = 89.7 bits (98), Expect = 6e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 53568 CGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTG-CGT 53626 |||| ||||||||||||||||| |||||||||||||| | || || ||||| ||| || Sbjct 2151 CGTTTGCCATCTACCTCGAGCCATGGCACGCCGACATCTTTGATTTCCTCGA-CTGCCGC 2209 Query 53627 CTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCG 53686 ||| || | || ||| ||| ||||| || ||| || | ||||| ||| Sbjct 2210 AAGAACACCGGCAAGGAGGAGCAGCGAGCACGTGATCTCTTTTATGCGGTCTGGATCCCG 2269 Query 53687 GACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAG 53746 || ||||||||| | || ||| | ||| |||||| || ||||| ||| ||| Sbjct 2270 GATCTCTTCATGAAGCGCGTTGAGGCGAACGGCGAGTGGACGCTCATGTGTCCGGCGGAG 2329 Query 53747 TGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTT 53782 || || || ||| | | ||| | || ||||||||| Sbjct 2330 TGTCCAGGGCTCGATGATGTGTGGGGAGAGGAGTTT 2365 >seq44860 Length=53707 Score = 86.0 bits (94), Expect = 7e-12 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 53570 TTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTG-CGTCT 53628 || |||||||||||||||||||||||||||||||| | || || ||||| ||| || Sbjct 3188 TTTGCCATCTACCTCGAGCCGTGGCACGCCGACATCTTCGACTTCCTCGA-CTGCCGCAA 3246 Query 53629 GAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGGA 53688 ||| || | ||||| | | ||||| || ||| ||| | ||||| ||||| Sbjct 3247 GAACACCGGCAAAGAAGAACAGAGAGCACGTGATCTCTTTTATGCTGTCTGGATCCCGGA 3306 Query 53689 CCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTG 53748 ||||||||| | ||||| | ||| || ||| || ||||| ||| ||||| Sbjct 3307 TCTCTTCATGAAGCGCGTGGAAGCGAACGGCGAATGGACGCTCATGTGTCCGGCTGAGTG 3366 Query 53749 CCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTT 53782 || || ||| | | ||| | || ||||||||| Sbjct 3367 TCCGGGGCTCGATGATGTGTGGGGAGAGGAGTTT 3400 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 55482 TACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCATGGGCA 55541 |||||||| ||||| | || || ||||| || || |||||||| ||||| | |||| Sbjct 6159 TACGCAACAGTCTGCTTCTCGCTCCCATGCCCACTGCCTCGACGGCGCAGATTCTTGGCA 6218 Query 55542 ACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGCAGGTG 55601 ||||||| | ||||||| ||||||| ||||||||| ||| || ||| | || | Sbjct 6219 ACAACGAATCAATCGAGCCATACACGAGCAACATCTATACGCGTCGCGTCCTGTCTGGAG 6278 Query 55602 AGTTT 55606 ||||| Sbjct 6279 AGTTT 6283 >seq59486 Length=21388 Score = 84.2 bits (92), Expect = 2e-11 Identities = 130/183 (71%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 152935 GTGGCATCCCGAACATTGCGCGGCTTTCCCCGGAGTGGAAACACGCCGAACGCG-TTGCG 152993 ||||| || || |||||| || | || |||| ||| ||||||||||| | ||| | || Sbjct 20118 GTGGCCTCGCGCACATTGAGCAGTTTACCCCTGAGCGGAAACACGCC-ATAGCGATCCCG 20176 Query 152994 GCCTACAACGCTCAGACCGGCAATAGCAAGGGCTTTCGCCGAGTCACCCTCGGTGATAAT 153053 ||||| || | || ||||| | || || | || |||||||| ||||| |||| ||| Sbjct 20177 CCCTACCACTCCCAATCCGGCCACGGCCAGCGTCTTGGCCGAGTCTCCCTCTGTGAGAAT 20236 Query 153054 AAGCGTACAGTCGTGAGACCGATGAGTACCGGCCCAGTTGGCGTCGTCAAGCTTGGGGAT 153113 ||||| ||| | || | || ||||| |||||||||||| || || ||||| Sbjct 20237 GAGCGTGCAGCCCGCCGAGTTCTTGGTGCCGGCGTCGTTGGCGTCGTCTAGTTTCGGGAT 20296 Query 153114 TCC 153116 || Sbjct 20297 GCC 20299 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545927258438600