Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11]
188,407 sequences; 1,026,046,400 total letters
Query= NC_028491.1
Length=98392
Score E
Sequences producing significant alignments: (Bits) Value
seq176294 93.3 3e-14
seq159113 93.3 3e-14
seq165127 87.8 1e-12
seq166784 84.2 1e-11
>seq176294
Length=1487
Score = 93.3 bits (102), Expect = 3e-14
Identities = 161/232 (69%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | ||| |||||||||||||| ||||| |||||||| ||||| || || |
Sbjct 1026 CCACCACGAAGGCGCAACACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGCTA 967
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | |||||||||||||| || || || || | | ||| ||||| || ||
Sbjct 966 AGAGTGCGACCATCTTCAAGTTGTTTTCCAGCGAAGATCAGTCTCTGCTGGTCAGGGGGA 907
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGT--CTTCGCTCTCCA 34657
| ||||| ||||| |||||| |||| || |||| ||| | |||||
Sbjct 906 ATACCCTCTTTGTCCTGAATCTTTGCCTTTACATTCTCGATGGTGTCACTTGG--CTCCA 849
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709
| || | || || || || ||||||| || || || || |||||||| ||
Sbjct 848 CCTCGAGAGTAATGGTCTTGCCGGTTAGGGTCTTGACGAAGATCTGCATTTT 797
>seq159113
Length=23055
Score = 93.3 bits (102), Expect = 3e-14
Identities = 161/232 (69%), Gaps = 4/232 (2%)
Strand=Plus/Minus
Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539
|| || | ||| |||||||||||||| ||||| |||||||| || || || || |
Sbjct 22310 CCACCACGAAGGCGCAACACCAAATGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTA 22251
Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599
|| || || | |||||||||||||| || || || |||| | ||| ||||| || ||
Sbjct 22250 AGAGTGCGACCATCTTCAAGTTGTTTTCCAGCGAAGATTAGCCTCTGCTGGTCAGGGGGA 22191
Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGT--CTTCGCTCTCCA 34657
| ||||| ||||| |||||| |||| ||||||| ||| | |||||
Sbjct 22190 ATACCCTCTTTGTCCTGAATCTTTGCCTTTACATTCTCGATTGTGTCACTTGG--CTCCA 22133
Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709
| || | || || || || ||||| | || || || || |||||||| ||
Sbjct 22132 CCTCGAGAGTAATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATTTT 22081
>seq165127
Length=29611
Score = 87.8 bits (96), Expect = 1e-12
Identities = 92/121 (76%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537
|||| || | |||||||||||||| |||||||| ||||||||||| ||||| || ||
Sbjct 22090 CGCCACCACGCAGACGCAACACCAAGTGGAGAGTACTCTCCTTTTGGATGTTGTAGTCAC 22031
Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597
|| || || | ||||| || || || |||||||| || || | ||| ||||| || |
Sbjct 22030 TCAGGGTACGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGTG 21971
Query 34598 G 34598
|
Sbjct 21970 G 21970
>seq166784
Length=39261
Score = 84.2 bits (92), Expect = 1e-11
Identities = 91/121 (75%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537
|||| || | || ||||||||||| ||||||||||||||||| || ||||| || ||
Sbjct 566 CGCCACCACGCAGGCGCAACACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGC 625
Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597
|| || || | ||||| || || || |||||||| || || | ||| ||||| || |
Sbjct 626 TCAGGGTACGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGTG 685
Query 34598 G 34598
|
Sbjct 686 G 686
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 314006914646831
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |