Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq176294 93.3 3e-14 seq159113 93.3 3e-14 seq165127 87.8 1e-12 seq166784 84.2 1e-11 >seq176294 Length=1487 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| |||||||||||||| ||||| |||||||| ||||| || || | Sbjct 1026 CCACCACGAAGGCGCAACACCAAATGAAGAGTAGATTCCTTTTGGATGTTGTAGTCGCTA 967 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | |||||||||||||| || || || || | | ||| ||||| || || Sbjct 966 AGAGTGCGACCATCTTCAAGTTGTTTTCCAGCGAAGATCAGTCTCTGCTGGTCAGGGGGA 907 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGT--CTTCGCTCTCCA 34657 | ||||| ||||| |||||| |||| || |||| ||| | ||||| Sbjct 906 ATACCCTCTTTGTCCTGAATCTTTGCCTTTACATTCTCGATGGTGTCACTTGG--CTCCA 849 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 | || | || || || || ||||||| || || || || |||||||| || Sbjct 848 CCTCGAGAGTAATGGTCTTGCCGGTTAGGGTCTTGACGAAGATCTGCATTTT 797 >seq159113 Length=23055 Score = 93.3 bits (102), Expect = 3e-14 Identities = 161/232 (69%), Gaps = 4/232 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || || | ||| |||||||||||||| ||||| |||||||| || || || || | Sbjct 22310 CCACCACGAAGGCGCAACACCAAATGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTA 22251 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || | |||||||||||||| || || || |||| | ||| ||||| || || Sbjct 22250 AGAGTGCGACCATCTTCAAGTTGTTTTCCAGCGAAGATTAGCCTCTGCTGGTCAGGGGGA 22191 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAAAATTGTGT--CTTCGCTCTCCA 34657 | ||||| ||||| |||||| |||| ||||||| ||| | ||||| Sbjct 22190 ATACCCTCTTTGTCCTGAATCTTTGCCTTTACATTCTCGATTGTGTCACTTGG--CTCCA 22133 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTT 34709 | || | || || || || ||||| | || || || || |||||||| || Sbjct 22132 CCTCGAGAGTAATGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATTTT 22081 >seq165127 Length=29611 Score = 87.8 bits (96), Expect = 1e-12 Identities = 92/121 (76%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | |||||||||||||| |||||||| ||||||||||| ||||| || || Sbjct 22090 CGCCACCACGCAGACGCAACACCAAGTGGAGAGTACTCTCCTTTTGGATGTTGTAGTCAC 22031 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 || || || | ||||| || || || |||||||| || || | ||| ||||| || | Sbjct 22030 TCAGGGTACGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGTG 21971 Query 34598 G 34598 | Sbjct 21970 G 21970 >seq166784 Length=39261 Score = 84.2 bits (92), Expect = 1e-11 Identities = 91/121 (75%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 |||| || | || ||||||||||| ||||||||||||||||| || ||||| || || Sbjct 566 CGCCACCACGCAGGCGCAACACCAAGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGC 625 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 || || || | ||||| || || || |||||||| || || | ||| ||||| || | Sbjct 626 TCAGGGTACGTCCATCTTCCAGCTGCTTGCCGGCAAAGATCAACCTCTGCTGGTCTGGTG 685 Query 34598 G 34598 | Sbjct 686 G 686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314006914646831