Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq183125 89.7 5e-13 >seq183125 Length=18962 Score = 89.7 bits (98), Expect = 5e-13 Identities = 124/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Plus Query 6782 TTCGGGTTCCACGCGCACATCACGATCCTTCTGTCA-TCAGGGTTCCGCTTCAAGGTGTC 6840 ||||| |||||||||||||| | ||| | | | || | || ||| ||| | || || Sbjct 5736 TTCGGATTCCACGCGCACATGATGATACGGC-GACAGTTGGGATTCGTCTTGATCGTCTC 5794 Query 6841 GATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGCTTCGCTCCCCCGATA 6900 ||| || | |||||||| || | |||||||||| |||||||| | | | || Sbjct 5795 GATGACATTATGCAGCTGATCGACGCCCTGTCCCGTGTAGTCCGCGTGCATGTCTTTGTA 5854 Query 6901 CTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCC 6951 ||| || |||||||| | ||||||||| |||||||| ||||| | ||| || Sbjct 5855 CTCGGCGCCAAAGTGACGCCACTGGAAGCCGTAGACGGGGCCAAGGTCACC 5905 Score = 89.7 bits (98), Expect = 5e-13 Identities = 124/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 34394 GGCGACTTGGGCCCGGTCTACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTATCGGGGG 34453 || ||| | ||||| |||||||| ||||||||| | |||||||| || ||||| | Sbjct 5905 GGTGACCTTGGCCCCGTCTACGGCTTCCAGTGGCGTCACTTTGGCGCCGAGTACAAAGAC 5846 Query 34454 AGCGAAGCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTG 34513 | | |||||||| |||||||||| | || |||||||| | || ||||| || | Sbjct 5845 ATGCACGCGGACTACACGGGACAGGGCGTCGATCAGCTGCATAATGTCATCGAGACGATC 5786 Query 34514 AAGCGGAACCCTGA-TGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAA 34563 ||| ||| || | || | | | ||| | |||||||||||||| ||||| Sbjct 5785 AAGACGAATCCCAACTGTC-GCCGTATCATCATGTGCGCGTGGAATCCGAA 5736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447206702825040