Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq166784 86.0 4e-12 seq165127 86.0 4e-12 seq159113 82.4 5e-11 >seq166784 Length=39261 Score = 86.0 bits (94), Expect = 4e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| |||| || |||||||| || || |||| || | ||| | | || ||| Sbjct 680 GACCAGCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGTACCCTGAGCGAC 621 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCG 28018 ||||||||||| || ||||||||| | || ||||| ||||| ||||||| |||| Sbjct 620 TACAACATCCAGAAGGAGAGCACTCTCCACTTGGTGTTGCGCCTGCGTGGTGGCG 566 >seq165127 Length=29611 Score = 86.0 bits (94), Expect = 4e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 27904 GAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGAT 27963 || ||||| |||| || |||||||| || || |||| || | ||| | | || || Sbjct 21976 GACCAGCAGAGGTTGATCTTTGCCGGCAAGCAGCTGGAAGATGGACGTACCCTGAGTGAC 22035 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGGCG 28018 |||||||||||||| ||||| ||| | || ||||| |||||| ||||||| |||| Sbjct 22036 TACAACATCCAAAAGGAGAGTACTCTCCACTTGGTGTTGCGTCTGCGTGGTGGCG 22090 >seq159113 Length=23055 Score = 82.4 bits (90), Expect = 5e-11 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGA---AAGC 27846 ||||| ||||| ||||| || || ||||| ||| ||| || | || || || ||| Sbjct 22787 ATGCAGATTTTCGTGAAGACCCTCACTGGCAAAACTATCACCCTCGAAGTTGAGCCAAGT 22846 Query 27847 ACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | ||||| | || |||||| ||||| |||||||| || |||| || Sbjct 22847 GAC-ACGATCGAAAAC--GTCAAAGCCAAAATCCAGGACAAAGAGGGCATTCCCCCAGAC 22903 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 ||||| || | || || ||||| ||||| |||| || | ||| | | || ||| ||| Sbjct 22904 CAGCAGAGGCTTATCTTCGCCGGCAAACAGCTGGAGGATGGACGTACCCTGAGCGACTAC 22963 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||||||| ||||| |||| | || |||| ||||| ||||||| || Sbjct 22964 AACATCCAGAAAGAATCCACTCTTCACCTGGTCCTGCGTCTGCGTGGTGG 23013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355045265087289