Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq159113 98.7 9e-16 seq177713 87.8 2e-12 seq166919 86.0 5e-12 seq26467 84.2 2e-11 >seq159113 Length=23055 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| || || ||| ||||| || || || || ||| || || ||| | || || Sbjct 22995 ACCAGGTGAAGAGTGGATTCTTTCTGGATGTTGTAGTCGCTCAGGGTACGTCCATCCTCC 22936 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||||||||| || || ||||| | ||||||||| | ||| | || |||||||||| | Sbjct 22935 AGCTGTTTGCCGGCGAAGATAAGCCTCTGCTGGTCTGGGGGAATGCCCTCTTTGTCCTGG 22876 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 ||||| ||||| | | | ||| || || | ||| || || | |||||| |||| Sbjct 22875 ATTTTGGCTTTGACGTTTTCGATCGTGTCACTTGGCTCAACTTCGAGGGTGATAGTTTTG 22816 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || || || || || || ||||| Sbjct 22815 CCAGTGAGGGTCTTCACGAAAATCTGCAT 22787 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 39069 GCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTC 39128 ||| ||||||||||| || || || ||||| ||||| || ||| ||| || || | Sbjct 22299 GCGCAACACCAAATGAAGAGTAGATTCCTTTTGGATATTGTAGTCGCTAAGAGTGCGACC 22240 Query 39129 GTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTT 39188 || ||||| ||||| || || || || || | ||||||||| | ||| | | |||||| Sbjct 22239 ATCTTCAAGTTGTTTTCCAGCGAAGATTAGCCTCTGCTGGTCAGGGGGAATACCCTCTTT 22180 Query 39189 GTCCATGATTTTCTG-TTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGA 39247 |||| ||| | | || || | || | | || || || | |||||| || | || | Sbjct 22179 GTCC-TGAATCTTTGCCTTTACATTCTCGATTGTGTCACTTGGCTCCACCTCGAGAGTAA 22121 Query 39248 TACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 | | || || ||||| || || || ||||| ||||| || Sbjct 22120 TGGTCTTGCCGGTCAGGGTCTTGACGAAGATCTGCATTTT 22081 Score = 86.0 bits (94), Expect = 5e-12 Identities = 128/182 (70%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| ||| || ||| ||||| || || || || || || || ||| | || || Sbjct 22767 ACCAGATGAAGAGTGGATTCTTTCTGGATGTTGTAGTCACTCAGGGTACGTCCATCCTCC 22708 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||||||||| || || ||||| | ||||||||| | ||| | || |||||||||| | Sbjct 22707 AGCTGTTTGCCGGCGAAGATAAGCCTCTGCTGGTCTGGGGGAATGCCCTCTTTGTCCTGG 22648 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 ||||| ||||| | | | ||| || || | ||| || || | ||||| ||||| Sbjct 22647 ATTTTGGCTTTGACGTTTTCGATCGTGTCACTTGGCTCAACTTCGAGGGTGATCGTTTTT 22588 Query 39256 CC 39257 || Sbjct 22587 CC 22586 >seq177713 Length=14691 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| || | ||||| | ||| | || |||||| || || || || || || || Sbjct 320 CATGCCACCGCGCAAGCGAAGCACAAGGTGGAGCGTGGATTCCTTCTGGATGTTGTAGTC 261 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 | || || || | || || ||||||||||| || || || || | ||||||||||| Sbjct 260 GCTCAGAGTACGACCATCCTCCAGCTGTTTGCCGGCGAAGATCAGCCTCTGCTGGTCGGG 201 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 || | || || |||||| ||| || ||| | | | | ||| ||||| | ||| Sbjct 200 AGGGATGCCTTCCTTGTCCTGGATCTTGGCTTTCACGTTTTCGATCGTGTCGCTGGGCTC 141 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| ||||| | || || ||||| || || |||||||| ||||| Sbjct 140 AACTTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACAAAGATCTGCAT 90 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 39067 AAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGT 39126 ||||| | ||| | || |||||| ||||| || || || || ||| || || || Sbjct 1774 AAGCGAAGCACAAGGTGGAGCGTGGATTCTTTCTGGATGTTGTAGTCGCTCAGAGTACGG 1715 Query 39127 TCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCT 39186 | || || ||||||||||| || || || || | ||||||||||| || | || || Sbjct 1714 CCATCCTCCAGCTGTTTGCCAGCGAAGATCAGCCTCTGCTGGTCGGGAGGGATGCCTTCC 1655 Query 39187 TTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTG 39246 |||||| ||| || || | || | | ||| ||||| | ||| || |||| ||| Sbjct 1654 TTGTCCTGGATCTTGGCCTTCACGTTCTCGATCGTGTCGCTTGGCTCAACTTCCAGGGTG 1595 Query 39247 ATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | || || ||||| || || || ||||| ||||| Sbjct 1594 ATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 1557 >seq166919 Length=61529 Score = 86.0 bits (94), Expect = 5e-12 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || ||| | || || ||||||||||| || || ||||| | |||||| || | ||| Sbjct 59115 AGGGTACGTCCATCTTCCAGCTGTTTGCCGGCGAAGATAAGCCTCTGCTGATCTGGGGGA 59056 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | || |||| ||||| |||||| ||||| || | | ||| || || | ||| || Sbjct 59055 ATGCCCTCTCTGTCCTGGATTTTGGCTTTGACGTTCTCGATCGTGTCACTTGGCTCAACT 58996 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | |||||| |||| || || || || || || || || ||||| Sbjct 58995 TCAAGAGTGATAGTTTTGCCAGTGAGGGTCTTTACGAAAATCTGCAT 58949 >seq26467 Length=1226 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||||||| || || ||| || || || || || ||| || || || |||| || Sbjct 792 ACCAAATGCAGAGTAGACTCCTTCTGGATGTTGTAGTCGCTCAGAGTACGACCGTCCTCC 733 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 ||||||||||| || ||||| || | ||||||||||| || | | || |||||| | Sbjct 732 AGCTGTTTGCCGGCGAATATCAGCCTCTGCTGGTCGGGAGGGATACCTTCCTTGTCCTGG 673 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || || | || | | ||||| || | || || || | |||||| | ||| Sbjct 672 ATCTTGGCCTTCACATTCTCGATGGTATCACTGGGTTCGACCTCGAGTGTGATAGTCTTT 613 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || ||||| ||||| || ||||| Sbjct 612 CCAGTAAGTGTTTTCACAAAAATCTGCAT 584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428559272963591