Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq159113 125 5e-24 seq166919 116 2e-21 seq176294 109 4e-19 seq26467 105 5e-18 seq88483 98.7 7e-16 seq177713 95.1 8e-15 seq50026 93.3 3e-14 seq14326 89.7 3e-13 >seq159113 Length=23055 Score = 125 bits (138), Expect = 5e-24 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || |||||||| || ||||| ||||| ||||||||||| | | Sbjct 22787 ATGCAGATTTTCGTGAAGACCCTCACTGGCAAAACTATCACCCTCGAAGTTGAGCCAAGT 22846 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | ||| ||||| |||||||| || | || ||||| || Sbjct 22847 GACACGATCGAAAACGTCAAAGCCAAAATCCAGGACAAAGAGGGCATTCCCCCAGACCAG 22906 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || ||||||||||| ||||| || | ||| || | |||| |||||| Sbjct 22907 CAGAGGCTTATCTTCGCCGGCAAACAGCTGGAGGATGGACGTACCCTGAGCGACTACAAC 22966 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||| ||||| Sbjct 22967 ATCCAGAAAGAATCCAC 22983 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| || ||||| || || || || || |||||||| || || | Sbjct 22081 AAAATGCAGATCTTCGTCAAGACCCTGACCGGCAAGACCATTACTCTCGAGGTGGAGCCA 22140 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | |||| ||| ||| |||||||| ||| | || || || Sbjct 22141 AGTGACACAATCGAGAATGTAAAGGCAAAGATTCAGGACAAAGAGGGTATTCCCCCTGAC 22200 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | |||| || || || |||||||| ||||| | |||||| | |||| ||| Sbjct 22201 CAGCAGAGGCTAATCTTCGCTGGAAAACAACTTGAAGATGGTCGCACTCTTAGCGACTAC 22260 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 || || ||||| || || || | ||||| || || Sbjct 22261 AATATCCAAAAGGAATCTACTCTTCATTTGGTGTT 22295 Score = 95.1 bits (104), Expect = 8e-15 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 23638 GGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAAAAA 23697 |||||||||||||| ||||||||||| | | ||||| | |||| | ||| ||| Sbjct 22586 GGAAAAACGATCACCCTCGAAGTTGAGCCAAGTGACACGATCGAAAACGTCAAAGCCAAA 22645 Query 23698 ATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAA 23757 || |||||||| || | || ||||| || ||| | | || || ||||||||||| Sbjct 22646 ATCCAGGACAAAGAGGGCATTCCCCCAGACCAGCAGAGGCTTATCTTCGCCGGCAAACAG 22705 Query 23758 CTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807 ||||| || | ||| || | | || |||||||| || ||||| ||||| Sbjct 22706 CTGGAGGATGGACGTACCCTGAGTGACTACAACATCCAGAAAGAATCCAC 22755 >seq166919 Length=61529 Score = 116 bits (128), Expect = 2e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || |||||||| || ||||| |||||||| |||||||| | | Sbjct 58949 ATGCAGATTTTCGTAAAGACCCTCACTGGCAAAACTATCACTCTTGAAGTTGAGCCAAGT 59008 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | ||| ||||| |||| ||| || | || |||||||| Sbjct 59009 GACACGATCGAGAACGTCAAAGCCAAAATCCAGGACAGAGAGGGCATTCCCCCAGATCAG 59068 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || ||||||||||| |||||||| | ||| || | || | | |||| Sbjct 59069 CAGAGGCTTATCTTCGCCGGCAAACAGCTGGAAGATGGACGTACCCTGAGCTACTTCAAC 59128 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||| ||||| Sbjct 59129 ATCCAGAAAGAATCCAC 59145 Score = 93.3 bits (102), Expect = 3e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || ||| |||| || ||||| |||||||| |||||||| | | Sbjct 59177 ATGCAGATTTTCGTGAAGACCGTCACTGGCAAAACTATCACTCTTGAAGTTGAGCCAAGT 59236 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | ||| ||||| |||||||| || | || |||||||| Sbjct 59237 GACACGATCGAGAACGTCAAAGCCAAAATCCAGGACAAAGAGGGCATTCCCCCAGATCAG 59296 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCAC 23774 ||| | | || || |||||||| || ||||| || | ||| || Sbjct 59297 CAGAGGCTTATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTAC 59340 >seq176294 Length=1487 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 ||||||||||| ||||| || ||||| || || || || || |||||||| || || | Sbjct 797 AAAATGCAGATCTTCGTCAAGACCCTAACCGGCAAGACCATTACTCTCGAGGTGGAGCCA 856 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 | ||||| | || | |||| ||| ||| |||||||| ||| | || || || Sbjct 857 AGTGACACCATCGAGAATGTAAAGGCAAAGATTCAGGACAAAGAGGGTATTCCCCCTGAC 916 Query 23728 CAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTAC 23787 || ||| | | || || || || |||||||| ||||| | |||||| | |||| ||| Sbjct 917 CAGCAGAGACTGATCTTCGCTGGAAAACAACTTGAAGATGGTCGCACTCTTAGCGACTAC 976 Query 23788 AACATACAAAAAGAGTCCACATTACATTTAGTTTT 23822 ||||| ||||| || || || | ||||| || || Sbjct 977 AACATCCAAAAGGAATCTACTCTTCATTTGGTGTT 1011 Score = 86.0 bits (94), Expect = 4e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 23638 GGAAAAACGATCACTCTCGAAGTTGACTCCACGGACACTGTTGAAATATTAAAACAAAAA 23697 |||||||||||||| |||||||| || | | ||||| | |||| | ||| ||| Sbjct 1265 GGAAAAACGATCACCCTCGAAGTCGAGCCAAGTGACACGATCGAAAACGTCAAAGCCAAA 1324 Query 23698 ATTGCTGACAAAGAAGGTGTACCGCCAGATCAACAGCGTTTAATATTTGCCGGCAAACAA 23757 || |||||||| || | || ||||| || ||| | | || || |||||||| || Sbjct 1325 ATCCAGGACAAAGAGGGCATTCCCCCAGACCAGCAGAGGCTTATCTTCGCCGGCAAGCAG 1384 Query 23758 CTGGAAGACGAACGCACTTTAGGCGATTACAACATACAAAAAGAGTCCAC 23807 || || || | ||| || | |||| |||||||| || ||||| ||||| Sbjct 1385 CTTGAGGATGGACGTACCCTGAGCGACTACAACATCCAGAAAGAATCCAC 1434 >seq26467 Length=1226 Score = 105 bits (116), Expect = 5e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||| || || ||||| || ||||| ||||| || || ||| Sbjct 584 ATGCAGATTTTTGTGAAAACACTTACTGGAAAGACTATCACACTCGAGGTCGAACCCAGT 643 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 || || | || ||| | || | || | | ||||| |||||| | || || || || Sbjct 644 GATACCATCGAGAATGTGAAGGCCAAGA-TCCAGGACAAGGAAGGTATCCCTCCCGACCA 702 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | | ||||| ||||||||||| ||||| |||| || ||| | |||| ||||| Sbjct 703 GCAGAGGCTGATATTCGCCGGCAAACAGCTGGAGGACGGTCGTACTCTGAGCGACTACAA 762 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || || ||||| || | ||||| || Sbjct 763 CATCCAGAAGGAGTCTACTCTGCATTTGGT 792 >seq88483 Length=20907 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || ||||| || || ||||| || ||||| ||||| || || ||| Sbjct 647 ATGCAGATTTTTGTGAAAACACTTACTGGAAAGACTATCACACTCGAGGTCGAACCCAGT 588 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | |||| | || || || ||||| |||||| | || || || || Sbjct 587 GATACCATCGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGTATCCCTCCCGACCAG 528 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || ||||||||||| ||||| || | || ||| | |||| |||||| Sbjct 527 CAGAGGCTGATCTTCGCCGGCAAACAGCTGGAGGATGGTCGTACTCTGAGCGACTACAAC 468 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGT 23819 || || || ||||| || | ||||| || Sbjct 467 ATCCAGAAGGAGTCTACTCTGCATTTGGT 439 >seq177713 Length=14691 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || || || ||||| || || || || ||||| || |||||||| ||| Sbjct 90 ATGCAGATCTTTGTGAAGACCCTGACTGGCAAGACCATCACCCTGGAAGTTGAGCCCAGC 149 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| | ||| || || ||||| ||||| | || || || || Sbjct 150 GACACGATCGAAAACGTGAAAGCCAAGATCCAGGACAAGGAAGGCATCCCTCCCGACCAG 209 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || ||||||||||| ||||| || | || ||| | |||| |||||| Sbjct 210 CAGAGGCTGATCTTCGCCGGCAAACAGCTGGAGGATGGTCGTACTCTGAGCGACTACAAC 269 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || ||||| Sbjct 270 ATCCAGAAGGAATCCAC 286 >seq50026 Length=5431 Score = 93.3 bits (102), Expect = 3e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || |||||||| || ||||| |||||||| |||||||| | | Sbjct 677 ATGCAGATTTTCGTGAAGACCCTCACTGGCAAAACTATCACTCTTGAAGTTGAGCCAAGT 736 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | ||| ||||| |||||||| || | || ||||| || Sbjct 737 GACACGATCGAGAACGTCAAAGCCAAAATCCAGGACAAAGAGGGCATTCCCCCAGACCAG 796 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCAC 23774 ||| | | || || |||||||| || ||||| || | ||| || Sbjct 797 CAGAGGCTTATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTAC 840 >seq14326 Length=16399 Score = 89.7 bits (98), Expect = 3e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||||||||| || |||||||| || ||||| |||||||| |||||||| | | Sbjct 10522 ATGCAGATTTTCGTGAAGACCCTCACTGGCAAAACTATCACTCTTGAAGTTGAGCCAAGT 10463 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | ||| ||||| |||||||| || | || |||| || Sbjct 10462 GACACGATCGAGAACGTCAAAGCCAAAATCCAGGACAAAGAGGGCATTCCCCCAGGCCAG 10403 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCAC 23774 ||| | | || || |||||||| || ||||| || | ||| || Sbjct 10402 CAGAGGCTTATCTTCGCCGGCAAGCAGCTGGAGGATGGACGTAC 10359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337233458870756