Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq172076 109 5e-19 seq18922 109 5e-19 >seq172076 Length=28491 Score = 109 bits (120), Expect = 5e-19 Identities = 149/206 (72%), Gaps = 3/206 (1%) Strand=Plus/Plus Query 4919 ACAAAATC--TTTCT-ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGC 4975 |||||||| | ||| |||| |||||||| || || ||||| || || || || ||||| Sbjct 3319 ACAAAATCAATATCTTACTAGATTTTCGTTGACGATGCCGTCGCTTGCCGCGAAGAACGC 3378 Query 4976 CAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATC 5035 ||| || ||||| || |||| | |||||| || | | | ||||||| || || Sbjct 3379 CAAGACGTGAGAAATGAAGTGTCGCTCGTCATCTTTTAACGTATCCCAGTGGCCCAGGTC 3438 Query 5036 TTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGA 5095 ||| | || ||| ||||| || ||||||| || || ||||| || ||||||||||| Sbjct 3439 TTTCGATAGATCCACTTCCTCTGCAGTCCAGAAAGAGGCTTCGGCCTTTTTGTACATTTG 3498 Query 5096 CCAAATATCAGGATACTGAATCGGAA 5121 ||| || ||| | || | ||| |||| Sbjct 3499 CCAGATGTCATGGTATTTAATAGGAA 3524 >seq18922 Length=6667 Score = 109 bits (120), Expect = 5e-19 Identities = 149/206 (72%), Gaps = 3/206 (1%) Strand=Plus/Minus Query 4919 ACAAAATC--TTTCT-ACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGC 4975 |||||||| | ||| |||| |||||||| || || ||||| || || || || ||||| Sbjct 1342 ACAAAATCAATATCTTACTAGATTTTCGTTGACGATGCCGTCGCTTGCCGCGAAGAACGC 1283 Query 4976 CAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATC 5035 ||| || ||||| || |||| | | || ||| || || | | ||||||| || || Sbjct 1282 CAAGACGTGAGAAATGAAGTGCCGCTCCTCATCTTTTAGCGTATCCCAGTGGCCCAGGTC 1223 Query 5036 TTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGA 5095 ||| | || ||| ||||| || ||||||| || || ||||| || ||||||||||| Sbjct 1222 TTTCGATAGATCCACTTCCTCTGCAGTCCAGAAAGAGGCTTCGGCCTTTTTGTACATTTG 1163 Query 5096 CCAAATATCAGGATACTGAATCGGAA 5121 ||| || ||| | || | || |||| Sbjct 1162 CCAGATGTCATGGTATTTTATAGGAA 1137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426069004304531