Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hydroides_20elegans_20[genbank_20GCA_5F001703475.1_202016-08-11] 188,407 sequences; 1,026,046,400 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq44860 102 1e-16 seq179804 93.3 6e-14 seq18922 91.5 2e-13 seq172076 87.8 2e-12 >seq44860 Length=53707 Score = 102 bits (112), Expect = 1e-16 Identities = 110/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| || |||| |||||||| |||| |||| || | || ||||| || ||||||| Sbjct 7189 TCCACGCGAAGAAGTGCATGCTCGTCAATTTGCCGTAGTTGGGCTCGGCAATGTGAATAT 7130 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | ||||||||| ||||| ||| | | | | || |||||||| || || ||||||| Sbjct 7129 TGAGCGACTGACTCTGATCAATGTACACGGCCCGGTCGGCCGCCATCTTAATGATGGTCT 7070 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTG 76994 |||| | ||| ||||| | ||||||| Sbjct 7069 TTTGTGAAATCTCCCACACAGTTTTG 7044 >seq179804 Length=4616 Score = 93.3 bits (102), Expect = 6e-14 Identities = 108/146 (74%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| || |||| |||||||| || ||||| ||| | || ||||| || ||||| | Sbjct 2727 TCCACGCGAAGAAGTGCATGCTAGTGAGTTTTCCATAGTTGGGCTCGGCGATGTGAATGT 2786 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | |||||| || ||||| ||| | | | | || |||||||| || || ||||||| Sbjct 2787 TAAGCGACTGGCTCTGATCAATGTACACGGCCCGGTCGGCCGCCATCTTAATGATGGTCT 2846 Query 76969 TTTGAGGAATTTCCCAAATAGTTTTG 76994 |||| | ||| ||||| | ||||||| Sbjct 2847 TTTGTGAAATCTCCCACACAGTTTTG 2872 >seq18922 Length=6667 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 47837 CATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 47896 ||||||||||||||| || ||||| || ||||| ||||||||||| || |||||||| || Sbjct 4439 CATAACTCCCATTTTCTGGTATTCGCCGACACGCTTCTCGAAAAAGTTCGTTTTGCCCTC 4380 Query 47897 CAATGATATATTTTCCATAAAATCAAATGGATT 47929 | || || |||||||| || || ||||| || Sbjct 4379 GAGCGAAATGTTTTCCATGAAGTCGAATGGGTT 4347 >seq172076 Length=28491 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 47837 CATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTC 47896 ||||||||||||||| || ||||| || ||||| ||||||||||| || |||||||| || Sbjct 1233 CATAACTCCCATTTTCTGGTATTCGCCAACACGCTTCTCGAAAAAGTTCGTTTTGCCCTC 1292 Query 47897 CAATGATATATTTTCCATAAAATCAAATGGATT 47929 | || || |||||||| || || || || || Sbjct 1293 GAGCGAAATGTTTTCCATGAAGTCGAAGGGGTT 1325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693032794192480