Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq91 109 5e-19 seq18 98.7 8e-16 seq107 87.8 2e-12 >seq91 Length=320879 Score = 109 bits (120), Expect = 5e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || ||||| | |||||||| || | |||||||| || |||||||| ||||| Sbjct 61455 TTCCACCACGCAGACGGAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCGC 61396 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 |||||| || |||| ||||||||||| || ||| | || || | |||||||||| || Sbjct 61395 TGAGGGTTCGGCCGTCTTCCAGCTGTTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGG 61336 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | || ||||| || |||||| || || | | | || |||| | |||| Sbjct 61335 GGATTCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATTGTGTCACTTGCCTCCA 61276 Query 21127 TTTCCACGGTAATGGTCTTGCCGGT 21151 ||| | |||||||||||| || || Sbjct 61275 CTTCGAGGGTAATGGTCTTACCTGT 61251 Score = 104 bits (114), Expect = 2e-17 Identities = 144/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || ||||| | |||||||| || | |||||||| || || ||||| ||||| Sbjct 61804 TTCCACCACGCAGACGGAGCACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGC 61745 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||||| || | ||||||||||| || || ||| | || || | |||||||||| || Sbjct 61744 TGAGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGG 61685 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | || ||||| || |||||| || || | | | ||||||| | |||| Sbjct 61684 GAATTCCCTCCTTATCTTGGATCTTGGCCTTGACATTCTCAATTGTATCACTTGCCTCCA 61625 Query 21127 TTTCCACGGTAATGGTCTTGCC 21148 ||| | ||||||||||||||| Sbjct 61624 CTTCGAGGGTAATGGTCTTGCC 61603 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/201 (70%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| || ||||| | ||| || | ||| | || ||||||||||| ||||| ||||| Sbjct 62164 TCCACCACGCAGACGGAGGACAAGATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGCT 62105 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 ||||| || | ||||||||||| || || ||| | || || | |||||||||| ||| Sbjct 62104 GAGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGG 62045 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | || ||||| || |||||| || || | | | || |||| | |||| Sbjct 62044 AATTCCCTCCTTATCCTGGATCTTAGCCTTGACGTTCTCAATTGTGTCACTTGCCTCCAC 61985 Query 21128 TTCCACGGTAATGGTCTTGCC 21148 ||| | |||||||||||| || Sbjct 61984 TTCGAGGGTAATGGTCTTACC 61964 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || || || | || || | ||| | ||||| ||||||||||| || ||||| Sbjct 60870 TTCCTCCGCGGAGACGCAGGACGAGATGGAGGGTGGATTCCTTTTGAATATTGTAGTCGC 60811 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||||| | ||||||||||||| || || ||| | || || | |||||||||| || Sbjct 60810 TGAGGGTGCGACCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGG 60751 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | || ||||| || |||||| || || | | | ||||||| | || Sbjct 60750 GAATTCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATTGTATCACTTGCTTCAA 60691 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 ||| | ||||| |||||||| || | || || || || || |||||| Sbjct 60690 CTTCAAGTGTAATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCATT 60641 >seq18 Length=819520 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 20948 TCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGC 21007 ||| || ||||| | | |||| |||| || ||||| || || ||||| || || | Sbjct 141049 TCCACCCCGCAGACGCAAGACCAAGTGCAGCGTCGACTCTTTCTGGATGTTGTAATCGGA 140990 Query 21008 CAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGG 21067 ||| || || | ||||||||||| ||||| ||| |||| || | |||||||||| || Sbjct 140989 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAAATGAGCCGCTGCTGGTCCGGCGG 140930 Query 21068 CACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGT 21127 | ||||||||||| |||||| || || | ||| || || | ||| Sbjct 140929 GATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGGAAGCTTCCAC 140870 Query 21128 TTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || | || || ||||| ||||| | ||| |||||||| ||||||||| Sbjct 140869 CTCGAGTGTGATAGTCTTCCCGGTCAGCGTCTTGACAAAAATTTGCATT 140821 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/202 (70%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| || ||||| | |||||||| ||| | || || ||||| || ||||| ||||| | Sbjct 140822 TTCCTCCACGCAGACGGAGCACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAGTCAG 140763 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 ||||| || |||| |||| ||| || || || | || | | |||||| ||| || Sbjct 140762 AGAGGGTGCGGCCGTCTTCCAACTGCTTCCCGGCGAAGATCAAGCGCTGCTGATCCGGGG 140703 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | |||||||||||| |||||| || || | | | ||||||| || ||| Sbjct 140702 GAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATCGTATCACTGGCTTCCA 140643 Query 21127 TTTCCACGGTAATGGTCTTGCC 21148 ||| | ||||| |||||||| Sbjct 140642 CTTCGAGTGTAATAGTCTTGCC 140621 >seq107 Length=284601 Score = 87.8 bits (96), Expect = 2e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | || |||| ||| | || |||||||| || ||||| || || | | Sbjct 95672 CCTCCGCGCAGACGCAGTACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGAC 95731 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||| ||||| ||||| || | || || | |||||||||| || Sbjct 95732 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGCGGG 95791 Query 21069 ACGCCTTCCTTGTCGGCGATCTT 21091 | ||||||||||| |||||| Sbjct 95792 ATTCCTTCCTTGTCTTGGATCTT 95814 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422251887130436