Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq107 145 8e-30 seq98 140 3e-28 seq18 136 4e-27 seq91 114 1e-20 seq36 111 2e-19 >seq107 Length=284601 Score = 145 bits (160), Expect = 8e-30 Identities = 171/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || |||||||| || || || || ||||| | || || ||||| || Sbjct 95670 ATGCAAATCTTTGTGAAAACGCTGACCGGTAAGACGATCACACTTGAGGTGGAAGCTTCC 95611 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| |||||| ||| |||| || || ||||| ||||| ||||||| Sbjct 95610 GACACCATTGAGAACG-TCAAGGCAAAGATTCAGGATAAGGAGGGTATCCCTCCGGACCA 95552 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || ||||| | || ||||| ||||| || |||| ||||| | |||||||| Sbjct 95551 GCAGCGTCTCATTTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACGTTGTCAGACTACAA 95492 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 ||||||||| ||| | ||||||||| | || ||||| | |||| ||| Sbjct 95491 CATCCAGAAAGAGTCTACGCTGCATTTGGTCTTGCGTCTACGGGGTGGC 95443 Score = 104 bits (114), Expect = 2e-17 Identities = 132/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 40717 GGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAA 40776 ||||| || || ||| |||| || || |||| |||| | ||| |||||| || Sbjct 96220 GGCAAGACTATTACCCTCGAAGTAGAGGCCAGTGACACTATTGAAAATGTCAAGGCCAAG 96161 Query 40777 ATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAG 40836 || | || || || || ||||| |||||||||| || ||||| | ||| ||||| ||| Sbjct 96160 ATCCAGGATAAGGAAGGTATCCCTCCGGACCAGCAGCGCCTCATTTTCGCTGGCAAGCAG 96101 Query 40837 CTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTA 40896 || || || | || |||||| ||||||||||||||||| ||| | || || ||||| Sbjct 96100 CTCGAAGATGGCCGAACCCTCTCAGACTACAACATCCAGAAAGAGTCGACTCTCCATCTC 96041 Query 40897 GT 40898 || Sbjct 96040 GT 96039 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACA-GCGTGCAAACGCTCAAGGA 40772 || || || ||||| || | || || || || | |||| | || ||| | | |||| Sbjct 95874 ACAGGAAAGACCATTACACTTGAGGTAGAGGCATCTGACACGATTGAAAATGTT-AAGGC 95816 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || || | ||||| || || ||||| |||||||||| || ||||||| ||| ||||| Sbjct 95815 GAAGATCCAAGACAAGGAAGGAATCCCGCCGGACCAGCAGCGTCTCATCTTCGCCGGCAA 95756 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || |||| || ||||| || |||||||||||||||||| | || || || Sbjct 95755 GCAGCTCGAGGACGGCCGTACCCTGTCTGATTACAACATCCAGAAGGAGTCGACCCTCCA 95696 Query 40893 TCTAGTGTTGCG 40904 ||| || |||| Sbjct 95695 TCTGGTACTGCG 95684 Score = 89.7 bits (98), Expect = 5e-13 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 40717 GGCAAAACCATCACCGTCGACGTCGAAGCCACCGACA-GCGTGCAAACGCTCAAGGAAAA 40775 ||||| || ||||| | || || || || | || | | || |||| |||| | || Sbjct 96762 GGCAAGACTATCACTCTTGAAGTTGAGGCAAGTGATACGATTGAGAACG-TCAAAGCCAA 96704 Query 40776 AATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACA 40835 ||||| ||||| || || || || |||| ||||| || || || | |||||| || || Sbjct 96703 AATTCAGGACAAGGAAGGTATTCCTCCGGATCAGCAGCGGCTGATTTTCGCGGGGAAGCA 96644 Query 40836 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCT 40895 |||| |||| || || ||| || |||||||||||||||||| |||| || ||||| Sbjct 96643 ATTGGAGGACGGTCGAACTCTCTCGGATTACAACATCCAGAAGGAGTCCACCCTCCATCT 96584 Query 40896 AGT 40898 || Sbjct 96583 TGT 96581 >seq98 Length=303023 Score = 140 bits (154), Expect = 3e-28 Identities = 155/207 (75%), Gaps = 0/207 (0%) Strand=Plus/Plus Query 116948 TTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGG 117007 || ||||| || || || ||||| ||||||| |||| ||||| ||||| || ||||| Sbjct 281288 TTCAACGCGATTGACACCATGCCTTGCGTCAGGAAGAAAGCCGACTGGGCACTCAGCTGG 281347 Query 117008 ATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGC 117067 || | ||| | ||| ||| || || ||| | |||||||| || | || ||||| Sbjct 281348 ATGAGCAGCACCAACGCCACCTATGGAGAACGCATCGTGGCCTTTGCCTCGGTGGAGGGG 281407 Query 117068 GTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCC 117127 ||||||| ||| |||||| |||| || |||||||| ||||| || ||||||||| Sbjct 281408 ATCTTCTTCAGCGGCTCATTCGCCTCCATCTTCTGGCTCAAAAAACGGGGACTCATGCCC 281467 Query 117128 GGCCTGACTTTCAGCAACGAGCTCATC 117154 ||| |||| |||||||| ||||||||| Sbjct 281468 GGCTTGACATTCAGCAATGAGCTCATC 281494 Score = 118 bits (130), Expect = 1e-21 Identities = 127/163 (78%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 116645 ATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGAC 116704 |||||||| || || | |||||||| ||||| |||||||||||||||||||| ||| Sbjct 280801 ATGTACAAGAAAGCGGTCGCGTCGTTTTGGACGACGGAGGAGGTGGACCTGTCCAAAGAC 280860 Query 116705 A-CGAGCGACTGGGAG-CGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGG 116762 | ||| | |||||| ||||| ||| | |||||| | |||||| ||||||||||| Sbjct 280861 GTCCAGC-AGTGGGAGTCGCTT-AACAAAGACGAGCAGTACTTCATCTCGCACGTGCTGG 280918 Query 116763 CCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGT 116805 | || |||||||||||||| || || ||||| || || |||| Sbjct 280919 CTTTCTTCGCCGCCAGCGATGGAATTGTCAATGAAAACTTGGT 280961 >seq18 Length=819520 Score = 136 bits (150), Expect = 4e-27 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| || || || ||||| || || || || ||||| |||| || ||||| | Sbjct 140821 AATGCAAATTTTTGTCAAGACGCTGACCGGGAAGACTATCACACTCGAGGTGGAAGCTTC 140880 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 ||||| | | |||| |||||| || || | ||||| || || ||||| |||||| Sbjct 140881 CGACACGATCGAGAACG-TCAAGGCGAAGATCCAAGACAAGGAAGGTATCCCGCCGGACC 140939 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || ||||| | || ||||| |||||||| || | ||||| || ||| |||| Sbjct 140940 AGCAGCGGCTCATTTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGATTACA 140999 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||||| ||| | |||||||| | || ||||| || |||| || Sbjct 141000 ACATCCAGAAAGAGTCGACGCTGCACTTGGTCTTGCGTCTGCGGGGTGG 141048 Score = 113 bits (124), Expect = 5e-20 Identities = 137/184 (74%), Gaps = 2/184 (1%) Strand=Plus/Plus Query 40717 GGCAAAACCATCACCGTCGACGTCGAAGCCACCGACA-GCGTGCAAACGCTCAAGGAAAA 40775 ||||| || || || |||| || ||||||| || | | || ||||| |||||| || Sbjct 140621 GGCAAGACTATTACACTCGAAGTGGAAGCCAGTGATACGATTGAAAACG-TCAAGGCCAA 140679 Query 40776 AATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACA 40835 || | ||||| || ||||| ||| |||| ||||| || | |||| ||| || || || Sbjct 140680 GATCCAAGACAAGGAAGGCATTCCCCCGGATCAGCAGCGCTTGATCTTCGCCGGGAAGCA 140739 Query 40836 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCT 40895 | |||| |||| ||||||||| |||||||||||||||||||| | || || ||||| Sbjct 140740 GTTGGAAGACGGCCGCACCCTCTCTGACTACAACATCCAGAAGGAATCAACCCTCCATCT 140799 Query 40896 AGTG 40899 ||| Sbjct 140800 GGTG 140803 Score = 98.7 bits (108), Expect = 1e-15 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 40717 GGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGT-GCAAACGCTCAAGGAAAA 40775 || || ||||||||| |||| || || || | || | | | ||||| |||||| || Sbjct 139718 GGTAAGACCATCACCCTCGAAGTTGAGGCAAGTGATACGATCGAAAACG-TCAAGGCCAA 139776 Query 40776 AATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACA 40835 ||| | ||||| || || || || |||| ||||| || || |||| |||||| || || Sbjct 139777 AATCCAGGACAAGGAAGGTATTCCTCCGGATCAGCAGCGTCTGATCTTCGCGGGAAAGCA 139836 Query 40836 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCT 40895 | |||| |||| || || ||| ||||||||||||||| || || | || || ||||| Sbjct 139837 GTTGGAGGACGGTCGGACGCTCTCCGACTACAACATCCAAAAAGAATCAACTCTCCATCT 139896 Query 40896 AGT 40898 || Sbjct 139897 CGT 139899 >seq91 Length=320879 Score = 114 bits (126), Expect = 1e-20 Identities = 135/180 (75%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 40714 ACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGA 40772 || || || ||||| ||| |||| || || || | |||| | | |||| |||||| Sbjct 61251 ACAGGTAAGACCATTACCCTCGAAGTGGAGGCAAGTGACACAATTGAGAACG-TCAAGGC 61309 Query 40773 AAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAA 40832 || || | || || ||||| |||||| |||||||||| || || |||| || || || Sbjct 61310 CAAGATCCAGGATAAGGAGGGAATCCCCCCGGACCAGCAGCGTCTGATCTTTGCCGGAAA 61369 Query 40833 ACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||| |||| || ||||||| |||||||||||| ||||| ||| |||| || || Sbjct 61370 ACAGCTGGAAGACGGCCGAACCCTCAGCGACTACAACATTCAGAAAGAGTCCACCCTTCA 61429 Score = 111 bits (122), Expect = 2e-19 Identities = 136/183 (74%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 40717 GGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCA-AACGCTCAAGGAAAA 40775 || || ||||| ||| |||| || || || | |||| | | |||| |||||| || Sbjct 61964 GGTAAGACCATTACCCTCGAAGTGGAGGCAAGTGACACAATTGAGAACG-TCAAGGCTAA 62022 Query 40776 AATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACA 40835 || | || || ||||| || ||| |||||||||| || || |||| || || || || Sbjct 62023 GATCCAGGATAAGGAGGGAATTCCCCCGGACCAGCAGCGTCTGATCTTTGCCGGAAAGCA 62082 Query 40836 GCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCT 40895 |||||| || | |||||||||| ||||||||||||||| |||||| | || || ||||| Sbjct 62083 GCTGGAGGATGGCCGCACCCTCAGCGACTACAACATCCAAAAGGAGTCTACCCTCCATCT 62142 Query 40896 AGT 40898 || Sbjct 62143 TGT 62145 Score = 105 bits (116), Expect = 7e-18 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 40717 GGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGCAAACGCTCAAGGAAAAA 40776 ||||| ||||| ||| |||| || || || | || | | | | |||||| || Sbjct 61603 GGCAAGACCATTACCCTCGAAGTGGAGGCAAGTGATACAATTGAGAATGTCAAGGCCAAG 61662 Query 40777 ATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAG 40836 || | || || ||||| || ||| |||||||||| || || |||| || || || ||| Sbjct 61663 ATCCAAGATAAGGAGGGAATTCCCCCGGACCAGCAGCGTCTGATCTTTGCCGGAAAGCAG 61722 Query 40837 CTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCA 40892 ||||| || | |||||||||| |||||||||||||||||| ||| |||| || || Sbjct 61723 CTGGAGGATGGCCGCACCCTCAGCGACTACAACATCCAGAAAGAGTCCACCCTTCA 61778 >seq36 Length=576097 Score = 111 bits (122), Expect = 2e-19 Identities = 162/224 (72%), Gaps = 4/224 (2%) Strand=Plus/Plus Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005 |||| ||||| |||||||||||||| | || ||| |||| ||||| |||||||| || | Sbjct 83529 TGTTCAACGCAATCGAGACGATGCCCAGTGTGAAACAGAAAGCCGATTGGGCGCTCCGGT 83588 Query 117006 GGATCGCCGGCAGAG-AGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAG 117064 ||||| || | ||| || | || || || | | || || ||||| || || ||| Sbjct 83589 GGATCTCCAG-TGAGTTGGTGTCGTTTGGAGAAAGAATCGTCGCGTTCGCAGCGGTGGAG 83647 Query 117065 GGCGTCTTCTTT-TCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCAT 117123 || | |||||| |||| ||| || | ||||||||| | |||||||| ||| | || Sbjct 83648 GGGATTTTCTTTAGCGGGTCATTT-GCATCAATATTTTGGTTGAAGAAACGTGGCATTAT 83706 Query 117124 GCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 ||| || || || ||||| || || |||||| | ||||||| Sbjct 83707 GCCGGGTCTTACCTTCAGTAATGAACTCATCAGTCGTGACGAGG 83750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515210048418960