Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq107 129 5e-25 seq18 122 8e-23 seq91 100 2e-16 >seq107 Length=284601 Score = 129 bits (142), Expect = 5e-25 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || |||| | ||| ||||| || | ||||||||||| || |||||||| || | Sbjct 95444 CCACCCCGTAGACGCAAGACCAAATGCAGCGTAGACTCTTTCTGGATGTTGTAGTCTGAC 95503 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||||||||||| || ||||| | |||||||||||||| || ||||| Sbjct 95504 AACGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCCGGAGGG 95563 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690 || |||||||| || ||| ||| || || | || | |||||| | ||| || || Sbjct 95564 ATACCCTCCTTATCCTGAATCTTTGCCTTGACGTTCTCAATGGTGTCGGAAGCT-TCCAC 95622 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| | || | ||| || |||||||| ||||| ||||| || ||||| Sbjct 95623 CTCAAGTGTGATCGTCTTACCGGTCAGCGTTTTCACAAAGATTTGCAT 95670 Score = 96.9 bits (106), Expect = 3e-15 Identities = 134/185 (72%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||||||||| | | || |||| |||| || ||||| || || ||||||||||| Sbjct 95670 TACCTCCGCGCAGACGCAGTACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCAG 95729 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || || ||||||||||| || || ||| |||||||||||||||| || || | Sbjct 95730 ACAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGCG 95789 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | || || ||||||||| || || ||||| | ||| | ||||| | ||| ||| Sbjct 95790 GGATTCCTTCCTTGTCTTGGATCTTCGCCTTAACATTTTCAATCGTGTCAGATGC-CTCT 95848 Query 118689 ACCTC 118693 ||||| Sbjct 95849 ACCTC 95853 >seq18 Length=819520 Score = 122 bits (134), Expect = 8e-23 Identities = 157/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 ||| |||||||| | || |||||||| || |||||||||||| || ||||| ||| Sbjct 141034 CAAGACCAAGTGCAGCGTCGACTCTTTCTGGATGTTGTAATCGGACAGCGTGCGGCCATC 140975 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || ||||| | ||||| |||||||| || || || || || |||||||| Sbjct 140974 CTCCAGCTGCTTGCCAGCAAAAATGAGCCGCTGCTGGTCCGGCGGGATACCTTCCTTGTC 140915 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCG 118704 | || || || || | |||| ||||| | ||| || ||||||| || | | Sbjct 140914 TTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGGAAGCT-TCCACCTCGAGTGTGATAG 140856 Query 118705 TTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || |||||||| || || |||||||| ||||| Sbjct 140855 TCTTCCCGGTCAGCGTCTTGACAAAAATTTGCAT 140822 Score = 84.2 bits (92), Expect = 2e-11 Identities = 119/165 (72%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || || |||||||| |||||||| ||| | || || ||||| | ||| Sbjct 139893 TGGAGAGTTGATTCTTTTTGGATGTTGTAGTCGGAGAGCGTCCGACCGTCCTCCAACTGC 139834 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 ||||| ||| |||| |||||||||||||| ||||| || || |||||||| ||||| Sbjct 139833 TTTCCCGCGAAGATCAGACGCTGCTGATCCGGAGGAATACCTTCCTTGTCCTGGATTTTG 139774 Query 118656 TGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGT 118699 || || | ||||| || || | ||| ||| || |||| ||| Sbjct 139773 GCCTTGACGTTTTCGATCGTATCACTTGC-CTCAACTTCGAGGGT 139730 Score = 82.4 bits (90), Expect = 7e-11 Identities = 126/177 (71%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || || ||||| || || ||||||||| || || || || || ||||| Sbjct 140444 TGGAGGGTCGATTCTTTCTGGATATTGTAATCGGACAGGGTTCGGCCGTCTTCCAGCTGC 140385 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || |||||| | |||||||||||||| || ||||| || ||||||||||| ||||| Sbjct 140384 TTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGGATTTTG 140325 Query 118656 TGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGACCTCGACGGTCACCGTTTTGCC 118711 || || | ||||| || || | ||| |||||| || | || | || ||||| Sbjct 140324 GCCTTCACATTTTCGATCGTATCACTTGC-CTCGACTTCCAGCGTAATTGTCTTGCC 140269 >seq91 Length=320879 Score = 100 bits (110), Expect = 2e-16 Identities = 93/118 (79%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || |||||||| || |||||||| ||||| | ||||| |||||| Sbjct 61785 CACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCCTC 61726 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 ||||| ||||| || |||| ||||||||||| || || || || |||||||| ||| Sbjct 61725 CAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTATCT 61668 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| | | || || | |||| || || || |||||||| ||||| ||||| Sbjct 60868 CCTCCGCGGAGACGCAGGACGAGATGGAGGGTGGATTCCTTTTGAATATTGTAGTCGCTG 60809 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||||| ||||| ||||| ||||| || |||| ||||||||||| || || || Sbjct 60808 AGGGTGCGACCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGA 60749 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTC-CGTGCTCTCGAC 118690 || |||||||| || || || || || | || | || || | |||| || || Sbjct 60748 ATTCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATTGTATCACTTGCT-TCAAC 60690 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | ||| ||||| |||||||| || || || |||||||| Sbjct 60689 TTCAAGTGTAATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 60642 Score = 96.9 bits (106), Expect = 3e-15 Identities = 91/115 (79%), Gaps = 1/115 (1%) Strand=Plus/Minus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| |||| |||||||| ||||| |||||||| ||||| | ||||| |||||| | Sbjct 62144 CAAGATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCCTCCA 62085 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 |||| ||||| || |||| ||||||||||| || || || || |||||||| || Sbjct 62084 GCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTATC 62030 Score = 95.1 bits (104), Expect = 1e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | || |||||||| ||||||||||| ||||| | || || || || Sbjct 61436 CACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCGCTGAGGGTTCGGCCGTCTTC 61377 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||||||||||| || |||| ||||||||||| || || || || |||||||| || Sbjct 61376 CAGCTGTTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTATC 61320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433822886735332