Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq18 114 8e-21 seq107 111 1e-19 >seq18 Length=819520 Score = 114 bits (126), Expect = 8e-21 Identities = 165/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 34161 ATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGG 34220 |||| || ||||| | || |||| ||| | || |||||||| |||||||| |||| Sbjct 141050 ATCCACCCCGCAGACGCAAGACCAAGTGCAGCGTCGACTCTTTCTGGATGTTGTAATCGG 140991 Query 34221 ACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGACG 34279 ||||| ||| | || |||| ||||||||| || ||||||||||||||||||| || || Sbjct 140990 ACAGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAAATGAGCCGCTGCTGGTCCGGCG 140931 Query 34280 GGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCG 34339 || | | |||||||| ||||| ||| | | | |||| |||| | ||| Sbjct 140930 GG-ATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGGAAGCTTCC 140872 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || | ||||| || || ||||| || || || ||||| || ||||| Sbjct 140871 ACCTCGAGTGTGATAGTCTTCCCGGTCAGCGTCTTGACAAAAATTTGCAT 140822 Score = 100 bits (110), Expect = 2e-16 Identities = 145/203 (71%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | ||||| || || | || ||||||||| || ||||| ||||| Sbjct 140469 TCCACCACGGAGACGGAGCACGAGATGGAGGGTCGATTCTTTCTGGATATTGTAATCGGA 140410 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| ||| |||| |||| ||||||||| ||||||||||| ||||||||||| || Sbjct 140409 CAGGGTTCGGCCGTCTTCCAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGG 140350 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCG 34339 | | ||||||||| || ||||| ||| | || | |||| ||| | | ||| Sbjct 140349 AATTCCCTCCTTGTC--CTGGATTTTGGCCTTCACATTTTCGATCGTATCACTTGCCTCG 140292 Query 34340 ACGTCCACCGTGATGGTTTTGCC 34362 || |||| ||| || || ||||| Sbjct 140291 ACTTCCAGCGTAATTGTCTTGCC 140269 Score = 82.4 bits (90), Expect = 5e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || ||||| | |||||||| || | || ||| ||||| ||||||||||| || Sbjct 140821 TCCTCCACGCAGACGGAGCACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAGTCAGA 140762 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || ||| |||| ||||||||||| || ||||| || | |||||||| || ||| Sbjct 140761 GAGGGTGCGGCCGTCTTCCAACTGCTTCCCGGCGAAGATCAAGCGCTGCTGATCCGGGGG 140702 Query 34282 CACGCTCTCCTTGTC 34296 | || |||||||| Sbjct 140701 AATGCCTTCCTTGTC 140687 >seq107 Length=284601 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| ||||||||||| |||| | ||| |||| || | ||||||||| || ||| Sbjct 95480 TCTTTCTGGATGTTGTAGTCTGACAACGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAA 95539 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| ||||||||||| || | | |||||| || |||||| ||| | | Sbjct 95540 ATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTATCCTGAATCTTTGCCTTGACGTTC 95599 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | |||| | ||| || || | ||||| || || ||||| || ||||||||| Sbjct 95600 TCAATGGTGTCGGAAGCTTCCACCTCAAGTGTGATCGTCTTACCGGTCAGCGTTTTCACA 95659 Query 34379 AAGATCTGCAT 34389 ||||| ||||| Sbjct 95660 AAGATTTGCAT 95670 Score = 87.8 bits (96), Expect = 1e-12 Identities = 102/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||| ||||| || | || || ||||| |||||||| || ||| Sbjct 95672 CCTCCGCGCAGACGCAGTACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGAC 95731 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGACGGG 34281 || |||| |||| || | ||||||||| ||||| ||||| |||||||||| || |||| Sbjct 95732 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGCGGG 95791 Query 34282 CACGCTCTCCTTGTC 34296 | | |||||||| Sbjct 95792 -ATTCCTTCCTTGTC 95805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323066404897760