Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq6 120 3e-22 seq18 116 3e-21 seq107 87.8 2e-12 seq98 82.4 7e-11 >seq6 Length=1030571 Score = 120 bits (132), Expect = 3e-22 Identities = 177/242 (73%), Gaps = 8/242 (3%) Strand=Plus/Minus Query 23258 TACAACGCGTCAAATTCGGCACCGTA-ACAGTCGGCCAGGCCGGGCGATTGCAT-CGGAC 23315 |||| ||| || ||||| | || | ||| ||||||| |||||| | ||| ||||| Sbjct 233300 TACAGCGCATCGAATTCCTCGCCCCAGACA-TCGGCCAAGCCGGGACTCT-CATGCGGAC 233243 Query 23316 ACATGAGACTCCA--CATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCA 23373 |||| || | ||| | | | | | || || || || | ||| || |||||||| | ||| Sbjct 233242 ACATCAGGCACCAGTCCTCG-GAC-TTCTCCACCCGACGCATGAAGAGATCCGGCACCCA 233185 Query 23374 TAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATC 23433 ||||||||||||| || || || ||| ||||||| |||||| ||||| || ||| Sbjct 233184 GAGAGCGTAGAACAAATCACGAGCACGCTGCTCCTCTACGCCGGTATTCTTGCGCAGATC 233125 Query 23434 CAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCT 23493 || ||||| || || || || ||||||||||| ||||| | || ||||| ||||| || Sbjct 233124 CAGGAAGTCAAAAACATCGGCGTGCCACGGCTCTAGGTAGATTGCGAACGCTCCCGGCCT 233065 Query 23494 CT 23495 || Sbjct 233064 CT 233063 Score = 95.1 bits (104), Expect = 1e-14 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 23594 CCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATC 23653 || || ||||| | | |||||||| ||||| | || ||| | || || || ||||| Sbjct 232832 CCCTTGGCTCGGATGCAGTGAACGTTCAAACCAACACCACCGGCGGACTTGGAGATCATG 232773 Query 23654 GCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTT 23700 || ||||||||||||||||| |||||||| ||||||||||| ||||| Sbjct 232772 GCACATTGTTTCAGAGTGTCATAGATGCCGTCGATGCTGTCGTCTTT 232726 >seq18 Length=819520 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| ||||| || || || ||||| |||| || ||| | ||| Sbjct 140822 ATGCAAATTTTTGTCAAGACGCTGACCGGGAAGACTATCACACTCGAGGTGGAAGCTTCC 140881 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | ||||| || || ||||||||||| | ||||| |||||| Sbjct 140882 GACACGATCGAGAACGTCAAGGCGAAGATCCAAGACAAGGAAGGTATCCCGCCGGACCAG 140941 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||||| || || || |||||||| ||| |||| || || || |||||| ||| Sbjct 140942 CAGCGGCTCATTTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGATTACAAC 141001 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || || ||||| ||||| || || |||| | | ||| |||| || Sbjct 141002 ATCCAGAAAGAGTCGACGCTGCACTTGGTCTTGCGTCTGCGGGGTGG 141048 Score = 98.7 bits (108), Expect = 9e-16 Identities = 134/187 (72%), Gaps = 0/187 (0%) Strand=Plus/Plus Query 31218 CAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTCGAAACGGTCAAACAGA 31277 |||| || || |||||| |||| ||||| | || | |||||| ||||| | Sbjct 139716 CAGGTAAGACCATCACCCTCGAAGTTGAGGCAAGTGATACGATCGAAAACGTCAAGGCCA 139775 Query 31278 GAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAAC 31337 ||| |||||||||||| | || || || ||||||||||| || ||||| || || | Sbjct 139776 AAATCCAGGACAAGGAAGGTATTCCTCCGGATCAGCAGCGTCTGATCTTCGCGGGAAAGC 139835 Query 31338 AGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATC 31397 ||||||| ||| | ||| | ||| || ||||| ||||||||||| ||||| |||| Sbjct 139836 AGTTGGAGGACGGTCGGACGCTCTCCGACTACAACATCCAAAAAGAATCAACTCTCCATC 139895 Query 31398 TGGTACT 31404 | || || Sbjct 139896 TCGTCCT 139902 Score = 91.5 bits (100), Expect = 1e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 ||||||||| || | || || |||||||||||||| || ||||||||||| ||| |||| Sbjct 140334 GGACAAGGAGGGAATTCCTCCGGACCAGCAGCGTCTCATTTTCGCTGGCAAGCAGCTGGA 140393 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||| || || |||||| || || || ||||||||||| || ||||| || || Sbjct 140394 AGACGGCCGAACCCTGTCCGATTACAATATCCAGAAAGAATCGACCCTCCATCTCGTGCT 140453 >seq107 Length=284601 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || || || ||||| || || |||||||| | || || ||| | ||| Sbjct 95670 ATGCAAATCTTTGTGAAAACGCTGACCGGTAAGACGATCACACTTGAGGTGGAAGCTTCC 95611 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | || | ||||| || ||| | ||| ||||| || | || || ||||| Sbjct 95610 GACACCATTGAGAACGTCAAGGCAAAGATTCA-GGATAAGGAGGGTATCCCTCCGGACCA 95552 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || |||||||| ||| | || ||| || || || || || Sbjct 95551 GCAGCGTCTCATTTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACGTTGTCAGACTACAA 95492 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||| || ||||| || || || ||| |||| Sbjct 95491 CATCCAGAAAGAGTCTACGCTGCATTTGGT 95462 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 31286 GACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAA 31345 ||||||||||| | ||||| |||||||||||||| || ||||| ||||| ||| | || Sbjct 95805 GACAAGGAAGGAATCCCGCCGGACCAGCAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAG 95746 Query 31346 GACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||| || || ||||| ||||| || || || ||||| || ||||||||||| Sbjct 95745 GACGGCCGTACCCTGTCTGATTACAACATCCAGAAGGAGTCGACCCTCCATCTGGTACTG 95686 Query 31406 AGACTGAGGGGCGGTA 31421 | ||| | || |||| Sbjct 95685 CGTCTGCGCGGAGGTA 95670 >seq98 Length=303023 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/132 (75%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 58099 AGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGC 58158 ||||||| ||| || ||||| ||||| |||| ||| ||| | || || || || | | Sbjct 281788 AGGGTCTTCATTGCGACTTTGCCTGCCTGATGTTCTCGCACCTGGTAAACAAGCCCTCCC 281847 Query 58159 GGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCG-ATCGAAAATGAGTTTGTCACC 58217 ||| ||||| |||| || |||||||| ||||| ||| || || | |||||| | ||| Sbjct 281848 AGGAGCGCATTCTGGAGATCATCACCGATGCGGT-GCGCATTGAGCAGGAGTTTTTGACC 281906 Query 58218 GAAGCCCTACCG 58229 |||||||| ||| Sbjct 281907 GAAGCCCTTCCG 281918 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445758482074320