Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq36 93.3 5e-14 >seq36 Length=576097 Score = 93.3 bits (102), Expect = 5e-14 Identities = 156/224 (70%), Gaps = 5/224 (2%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 ||||||| | ||| || | ||| ||| || || || || ||||| | |||||| || | Sbjct 83750 CCTCGTCACGACTGATGAGTTCATTACTGAAGGTAAGACCCGGCATAATGCCACGTTTCT 83691 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | | ||||||||| || || ||||| ||| |||||| || || || || || || || | Sbjct 83690 TCAACCAAAATATTGATGCAAATGACCCGCTAAAGAAAATCCCCTCCACCGCTGCGAACG 83631 Query 33724 CAATAAGTCTCTCTCCATA----ACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCG 33779 | | | ||| |||||| | ||| | | | | |||||| | ||||||||| Sbjct 83630 CGACGATTCTTTCTCCAAACGACACCAACTCACTGGAG-ATCCACCGGAGCGCCCAATCG 83572 Query 33780 GCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33823 || |||| ||| |||| |||||||| || || || || || || Sbjct 83571 GCTTTCTGTTTCACACTGGGCATCGTCTCGATTGCGTTGAACAG 83528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629806412864880