Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq102 105 1e-17 >seq102 Length=290733 Score = 105 bits (116), Expect = 1e-17 Identities = 146/205 (71%), Gaps = 12/205 (6%) Strand=Plus/Minus Query 127312 CCGGCTATGATTAGCCTAGGTTTGAATAGATTGGCACTCTCGGCAAGTTTGGCATAGTCG 127371 ||||| | ||| ||| | || || || || ||||| |||| ||| | ||||| Sbjct 251037 CCGGCCACGATGAGCTTCGGCTTAAAGAGCTTGGCGTTCTCCCGAAGACGCTCGTAGTCA 250978 Query 127372 ACGAGTCCAGTCTGAGGATCCACCTTGTACGGCATGCTTTCGAAAAAGAGTGATGTAGCG 127431 | || ||| || | | ||||||||||||||||||||| |||||||||| ||| || ||| Sbjct 250977 ATGATTCCCGTTTCGGAATCCACCTTGTACGGCATGCTCTCGAAAAAGATTGACGTCGCG 250918 Query 127432 GACA--CGTTGC----------GGAATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCG 127479 || | |||| | ||| |||||||||| ||| || || || |||| || Sbjct 250917 GAGATTCGTTTCTTGTCGGTCATGAAGCCGTGCGTCAAGTGCCCGCCATCCGGCAAGTCC 250858 Query 127480 AGTCCCATGATTCTACCGTGCGGTT 127504 || ||||| |||| ||||||||||| Sbjct 250857 AGCCCCATAATTCGACCGTGCGGTT 250833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741046036935960