Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq107 149 1e-30 seq18 123 6e-23 seq91 109 1e-18 seq36 104 5e-17 >seq107 Length=284601 Score = 149 bits (164), Expect = 1e-30 Identities = 151/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||| |||||||| || || ||||| || | || | ||||| || || || || ||| Sbjct 95474 GTAGACTCTTTCTGGATGTTGTAGTCTGACAACGTGCGGCCGTCCTCGAGCTGCTTGCCA 95533 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| || | ||| || || ||||| || || || ||||||||||||||||| || Sbjct 95534 GCAAAAATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTATCCTGAATCTTTGCCTTG 95593 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| ||| || ||| ||||| ||||| || |||||||| || || ||| Sbjct 95594 ACGTTCTCAATGGTGTCGGAAGCTTCCACCTCAAGTGTGATCGTCTTACCGGTCAGCGTT 95653 Query 104543 TTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 95654 TTCACAAAGATTTGCAT 95670 Score = 127 bits (140), Expect = 5e-24 Identities = 139/185 (75%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 104348 AGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCT 104407 || || ||||| | || || |||||||| || || ||||| || || |||| || ||| Sbjct 96036 AGGACGAGATGGAGAGTCGACTCTTTCTGGATGTTGTAGTCTGAGAGGGTTCGGCCATCT 96095 Query 104408 TCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCC 104467 || || || || ||||| ||||| || | ||| || || ||||| || ||||| |||||| Sbjct 96096 TCGAGCTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCCGGAGGGATACCTTCCTTATCC 96155 Query 104468 TGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTC 104527 || ||||| || || |||||||| | || || || | ||||| || || ||||||||| Sbjct 96156 TGGATCTTGGCCTTGACATTTTCAATAGTGTCACTGGCCTCTACTTCGAGGGTAATAGTC 96215 Query 104528 TTACC 104532 || || Sbjct 96216 TTGCC 96220 >seq18 Length=819520 Score = 123 bits (136), Expect = 6e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | || || ||||| | || ||||||||||| ||||| || || Sbjct 140471 ATTCCACCACGGAGACGGAGCACGAGATGGAGGGTCGATTCTTTCTGGATATTGTAATCG 140412 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || |||| |||||||| || || || ||||| ||||| || | ||| || || ||| Sbjct 140411 GACAGGGTTCGGCCGTCTTCCAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGA 140352 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| || || ||||| || || || || |||||||| | ||||| || | || Sbjct 140351 GGAATTCCCTCCTTGTCCTGGATTTTGGCCTTCACATTTTCGATCGTATCACTTGCCTCG 140292 Query 104510 ACCTCTAGTGTAATAGTCTTACC 104532 || || || ||||| ||||| || Sbjct 140291 ACTTCCAGCGTAATTGTCTTGCC 140269 Score = 118 bits (130), Expect = 2e-21 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || |||||||| || || || || || || || | || || || || || || ||| Sbjct 141018 GTCGACTCTTTCTGGATGTTGTAATCGGACAGCGTGCGGCCATCCTCCAGCTGCTTGCCA 140959 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| |||| ||| || || || || || ||||| || || || ||||| || || Sbjct 140958 GCAAAAATGAGCCGCTGCTGGTCCGGCGGGATACCTTCCTTGTCTTGGATCTTCGCCTTG 140899 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || ||| || ||| ||||| ||||| |||||||| || || || || Sbjct 140898 ACGTTCTCGATCGTGTCGGAAGCTTCCACCTCGAGTGTGATAGTCTTCCCGGTCAGCGTC 140839 Query 104543 TTTACAAATATCTGCATT 104560 || ||||| || |||||| Sbjct 140838 TTGACAAAAATTTGCATT 140821 Score = 109 bits (120), Expect = 1e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | || || ||||| | || ||||| ||||| || || |||||| Sbjct 140823 ATTCCTCCACGCAGACGGAGCACCAGATGGAGGGTTGATTCCTTCTGGATGTTGTAGTCA 140764 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || || | |||||||| | || || || || || || | | ||| ||||| || Sbjct 140763 GAGAGGGTGCGGCCGTCTTCCAACTGCTTCCCGGCGAAGATCAAGCGCTGCTGATCCGGG 140704 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || || ||||| || || || ||||| | ||||| || | ||| Sbjct 140703 GGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCAATCGTATCACTGGCTTCC 140644 Query 104510 ACCTCTAGTGTAATAGTCTTACC 104532 || || |||||||||||||| || Sbjct 140643 ACTTCGAGTGTAATAGTCTTGCC 140621 >seq91 Length=320879 Score = 109 bits (120), Expect = 1e-18 Identities = 128/173 (74%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || ||||||||||| || ||||| || |||| |||||||| || |||||||| Sbjct 61423 GTGGACTCTTTCTGAATGTTGTAGTCGCTGAGGGTTCGGCCGTCTTCCAGCTGTTTTCCG 61364 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | ||| || || || || ||||| || |||||||| ||||| || || Sbjct 61363 GCAAAGATCAGACGCTGCTGGTCCGGGGGGATTCCCTCCTTATCCTGGATCTTGGCCTTG 61304 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGT 104535 || || || | || || || | || || || || ||||| |||||||| || Sbjct 61303 ACGTTCTCAATTGTGTCACTTGCCTCCACTTCGAGGGTAATGGTCTTACCTGT 61251 >seq36 Length=576097 Score = 104 bits (114), Expect = 5e-17 Identities = 87/107 (81%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 268910 TTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATA 268969 |||| ||| || || ||||| || |||||||| || || |||||||||||||| ||||| Sbjct 83165 TTCTCTCAGGAAGTTCAGATACCGGAAGCCAGGTGCTTCTACGGATTCCAGATCGCTATG 83224 Query 268970 GAAAATATTCATTCAGAGATGTACAGTCTATTAATAGATACTTATAT 269016 |||||||| ||||| ||||||||||| || | || ||||| || || Sbjct 83225 GAAAATATCCATTCGGAGATGTACAGCCTGCTGATTGATACCTACAT 83271 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151377436993068