Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq107 98.7 8e-16 seq18 89.7 4e-13 >seq107 Length=284601 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 48515 AACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCC 48574 || || ||||| || || ||| || || |||||||| || | ||| || ||||| Sbjct 95459 AAGACCAAATGCAGCGTAGACTCTTTCTGGATGTTGTAGTCTGACAACGTGCGGCCGTCC 95518 Query 48575 TCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCC 48634 || |||||||| || | |||| | ||||||||| ||| || | || ||||| ||| Sbjct 95519 TCGAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTATCC 95578 Query 48635 ATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTT 48694 ||| || ||||| | | ||||| |||| || ||| ||| | ||| || || Sbjct 95579 TGAATCTTTGCCTTGACGTTCTCAATGGTGTCGGAAGCTTCCACCTCAAGTGTGATCGTC 95638 Query 48695 TTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726 |||||||| || ||||||||||| || ||||| Sbjct 95639 TTACCGGTCAGCGTTTTCACAAAGATTTGCAT 95670 >seq18 Length=819520 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 ||| || || ||||||||||| | || || | |||||||||||||| || | | Sbjct 141013 CTCTTTCTGGATGTTGTAATCGGACAGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAA 140954 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 ||| | |||||||| ||| ||| | || ||||||||| || ||| ||||| Sbjct 140953 AATGAGCCGCTGCTGGTCCGGCGGGATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTT 140894 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | || || |||| || ||| ||||| ||| || || || ||||| || || || || Sbjct 140893 CTCGATCGTGTCGGAAGCTTCCACCTCGAGTGTGATAGTCTTCCCGGTCAGCGTCTTGAC 140834 Query 48715 AAAAATCTGCAT 48726 |||||| ||||| Sbjct 140833 AAAAATTTGCAT 140822 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421243904587421