Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq18 96.9 3e-15 seq107 95.1 1e-14 seq91 91.5 1e-13 >seq18 Length=819520 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 94780 TCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCT 94839 ||| || | || ||||| |||||||||| || || || || || | ||| |||||| Sbjct 141049 TCCACCCCGCAGACGCAAGACCAAGTGCAGCGTCGACTCTTTCTGGATGTTGTAATCGGA 140990 Query 94840 CATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGG 94899 || ||| | |||||||||||| || || |||| || | | ||||| || || || Sbjct 140989 CAGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAAATGAGCCGCTGCTGGTCCGGCGG 140930 Query 94900 AATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGAC 94959 |||||||| ||||| | || || ||||||||| ||| ||||| | || || Sbjct 140929 GATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATCGTGTCGGAAGCTTCCAC 140870 Query 94960 GTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | ||||| || || || || || || || ||||| || ||||| Sbjct 140869 CTCGAGTGTGATAGTCTTCCCGGTCAGCGTCTTGACAAAAATTTGCAT 140822 >seq107 Length=284601 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 ||||| ||||| |||| ||||| || || || | ||| || || || ||| | Sbjct 95456 CGCAAGACCAAATGCAGCGTAGACTCTTTCTGGATGTTGTAGTCTGACAACGTGCGGCCG 95515 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || || |||| || | | ||||| || ||||| ||||| || || Sbjct 95516 TCCTCGAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCCGGAGGGATACCCTCCTTA 95575 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | ||| |||||||||||| | | ||||| | || || |||| ||||| Sbjct 95576 TCCTGAATCTTTGCCTTGACGTTCTCAATGGTGTCGGAAGCTTCCACCTCAAGTGTGATC 95635 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || |||||||||||||| ||||| Sbjct 95636 GTCTTACCGGTCAGCGTTTTCACAAAGATTTGCAT 95670 >seq91 Length=320879 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/202 (71%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 || ||||||||||| | || || ||||| | ||| ||||||||||| |||||| Sbjct 60838 GTGGATTCCTTTTGAATATTGTAGTCGCTGAGGGTGCGACCGTCCTCCAGCTGCTTTCCG 60779 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| | | ||||| || || ||||| || || || || | || || |||||| Sbjct 60778 GCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTATCCTGGATCTTGGCCTTG 60719 Query 94931 ACGGCGCCGACAGTGTCAGCGTG-GTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGT 94989 ||| | | || ||| | || || || |||| || || || || || || ||||| Sbjct 60718 ACGTTCTCAATTGTATCA-CTTGCTTCAACTTCAAGTGTAATCGTCTTGCCCGTCAGAGT 60660 Query 94990 TTTCACAAAGATCTGCATGCTT 95011 ||||| ||||||||||| ||| Sbjct 60659 CTTCACGAAGATCTGCATTCTT 60638 Score = 82.4 bits (90), Expect = 7e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 94811 GTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCG 94870 ||||| |||||||| | ||| || ||||| | ||| | |||||||||||| |||||| Sbjct 62133 GTAGACTCCTTTTGGATGTTGTAGTCGCTGAGGGTGCGGCCATCCTCCAGCTGCTTTCCG 62074 Query 94871 CCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTG 94930 ||||||| | | ||||| || || ||||| || || || || | || || |||||| Sbjct 62073 GCAAAGATCAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTATCCTGGATCTTAGCCTTG 62014 Query 94931 ACG 94933 ||| Sbjct 62013 ACG 62011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448283237227560