Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq6 194 3e-45 seq26 190 3e-44 seq374 181 2e-41 >seq6 Length=1030571 Score = 194 bits (214), Expect = 3e-45 Identities = 199/260 (77%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||| | | || || || |||||||| || |||||||||||||| ||| Sbjct 993831 GCCAAGCGCCATCGAAAAGTCCTACGTGACAACATCCAGGGTATCACCAAGCCAGCCATC 993772 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || |||||||| ||||||||||| ||||| |||| || || |||| || |||| Sbjct 993771 CGCCGCCTGGCTCGCCGTGGTGGAGTGAAGCGAATCTCCGGCCTGATCTACGAGGAGACC 993712 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| ||||||| ||| ||| |||| || ||| | ||| |||||| Sbjct 993711 CGCGGAGTGTTGAAAGTCTTCCTTGAGAACGTCATCCGGGACGCTGTGACCTACACCGAG 993652 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || |||||||||||| ||||||| |||||||||| | ||||| ||||| Sbjct 993651 CACGCCAAGCGCAAGACTGTCACCGCCATGGACGTCGTCTATGCCCTCAAACGCCAAGGA 993592 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | |||| |||||||| Sbjct 993591 CGGACCCTTTACGGTTTTGG 993572 Score = 167 bits (184), Expect = 4e-37 Identities = 193/260 (74%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||| | | ||||| || |||||||| || ||||||||||| || ||| Sbjct 482639 GCCAAGCGCCATCGAAAAGTCCTTCGTGACAACATCCAGGGTATCACCAAGCCCGCCATC 482580 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || |||||||| ||||||||||| ||||| |||| || | |||| || |||| Sbjct 482579 CGCCGCCTGGCTCGCCGTGGTGGAGTGAAGCGAATCTCCGGCCTCATCTACGAGGAGACC 482520 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| ||||||| ||| ||| || | || || | ||| |||||| Sbjct 482519 CGCGGAGTGTTGAAAGTCTTCCTTGAGAACGTCATTCGGGACGCCGTGACCTACACCGAG 482460 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| ||||| ||||| |||||| | ||||| |||| ||||| | ||||| |||||| Sbjct 482459 CACGCCAAACGCAAGACCGTCACCGCTATGGACGTCGTGTATGCCCTAAAACGCCAAGGC 482400 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | || || ||||| Sbjct 482399 CGAACTCTCTACGGCTTTGG 482380 Score = 163 bits (180), Expect = 4e-36 Identities = 192/260 (74%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||| | | || || || |||||||| || || |||||||| || ||| Sbjct 712229 GCCAAGCGCCATCGAAAAGTCCTCCGTGACAACATCCAGGGTATTACCAAGCCCGCCATC 712288 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || |||||||| ||||||||||| || || |||| || | |||| || |||| Sbjct 712289 CGCCGCCTGGCTCGCCGTGGTGGAGTGAAACGAATCTCCGGCCTCATCTACGAGGAGACC 712348 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || |||||| ||||||| ||| ||| |||| || ||| | ||| |||||| Sbjct 712349 CGCGGAGTGTTGAAGGTCTTCCTTGAGAACGTCATCCGGGACGCTGTGACCTACACCGAG 712408 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || ||||| ||||| ||||||| |||| ||||| ||||||| ||||| Sbjct 712409 CACGCCAAGCGCAAGACCGTCACAGCCATGGACGTCGTGTATGCGCTGAAACGCCAAGGA 712468 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | || || ||||| Sbjct 712469 CGCACTCTCTACGGATTTGG 712488 >seq26 Length=693737 Score = 190 bits (210), Expect = 3e-44 Identities = 198/260 (76%), Gaps = 0/260 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||| | | || || || |||||||| || ||||||||||| || ||| Sbjct 88055 GCCAAGCGCCATCGAAAAGTCCTCCGTGACAACATCCAGGGTATCACCAAGCCCGCCATC 88114 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 ||||| |||||||| ||||||||||| ||||| |||| || | |||| ||||||| Sbjct 88115 CGTCGCCTGGCTCGCCGTGGTGGAGTGAAGCGAATCTCCGGCCTCATCTACGAAGAGACC 88174 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || ||||| ||||||| ||| ||| |||| || ||| | ||||||||| Sbjct 88175 CGCGGAGTGTTGAAAGTCTTCCTTGAGAACGTCATCCGGGACGCTGTGACTTATACCGAG 88234 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || |||||||||||| ||||||| |||||||||| | ||||| ||||| Sbjct 88235 CACGCCAAGCGCAAGACTGTCACCGCCATGGACGTCGTCTATGCCCTCAAACGCCAAGGA 88294 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | || |||||||| Sbjct 88295 CGGACCCTGTACGGTTTTGG 88314 >seq374 Length=53115 Score = 181 bits (200), Expect = 2e-41 Identities = 196/260 (75%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||| ||||| | | || || || |||||||| || ||||||||||| || ||| Sbjct 9765 GCCAAGCGCCATCGGAAAGTCCTACGTGACAACATCCAGGGTATCACCAAGCCGGCCATC 9706 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || || || ||||| ||||||||||| ||||| |||| || | |||| || |||| Sbjct 9705 CGCCGCCTAGCTCGCCGTGGTGGAGTGAAGCGAATCTCCGGCCTCATCTACGAGGAGACC 9646 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | || |||||| ||||||| ||| ||| |||| || ||| | ||| |||||| Sbjct 9645 CGCGGAGTGTTGAAGGTCTTCCTTGAGAACGTCATCCGGGACGCTGTGACCTACACCGAG 9586 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || || |||||||||||| ||||||| |||||||||| | ||||| ||||| Sbjct 9585 CACGCCAAGCGCAAGACTGTCACCGCCATGGACGTCGTCTATGCCCTCAAACGCCAAGGA 9526 Query 16673 CGTAAGATTTATGGTTTTGG 16692 || | | || |||||||| Sbjct 9525 CGGACACTGTACGGTTTTGG 9506 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073900769753