Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Hypsibius_20dujardini_20[genbank_20GCA_5F002082055.1_202017-04-07] 1,421 sequences; 104,154,999 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq107 134 1e-26 seq91 131 2e-25 seq18 122 8e-23 seq98 98.7 9e-16 seq92 87.8 2e-12 >seq107 Length=284601 Score = 134 bits (148), Expect = 1e-26 Identities = 110/134 (82%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||||| |||||| || | ||| | |||||||||||| || ||||||||||| | Sbjct 95672 CCTCCGCGCAGACGCAGTACCAGATGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGAC 95731 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| ||||||||||| ||| |||| | ||||||||||||||| ||| Sbjct 95732 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGCGGG 95791 Query 131128 ATTCCTTCTTTGTC 131141 |||||||| ||||| Sbjct 95792 ATTCCTTCCTTGTC 95805 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| || | ||||| || ||||| | || ||||| || || |||||||| || Sbjct 95442 AGCCACCCCGTAGACGCAAGACCAAATGCAGCGTAGACTCTTTCTGGATGTTGTAGTCTG 95501 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 || ||||| |||||| ||||||||||| || | || | ||||||||||||||||| Sbjct 95502 ACAACGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCCGGAG 95561 Query 131126 GGATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCG 131184 |||| || || || || ||| | | || ||||| | ||| | || |||| | || Sbjct 95562 GGATACCCTCCTTATC-CTGAATCTTTGCCTTGACGTTCTCAATGGTGTCGGAAGCTTCC 95620 Query 131185 ATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | || | || | || |||||||| || ||||| || || || ||||| Sbjct 95621 ACCTCAAGTGTGATCGTCTTACCGGTCAGCGTTTTCACAAAGATTTGCAT 95670 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | || || || | ||| | |||||||| || || |||||||| || Sbjct 96020 GCCACCACGGAGTCGGAGGACGAGATGGAGAGTCGACTCTTTCTGGATGTTGTAGTCTGA 96079 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | ||| || || || ||||||||||| ||| | || | ||||||||||||||||| Sbjct 96080 GAGGGTTCGGCCATCTTCGAGCTGCTTGCCAGCGAAAATGAGGCGCTGCTGGTCCGGAGG 96139 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| || || ||| || ||||| | || | ||| || ||| ||| | Sbjct 96140 GATACCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCAATAGTGTCACTGGCCTCTAC 96199 Query 131187 GTCGACGGTAA 131197 |||| ||||| Sbjct 96200 TTCGAGGGTAA 96210 >seq91 Length=320879 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | |||||| || | ||| | ||| || ||||||||||| ||||| ||||| Sbjct 60868 CCTCCGCGGAGACGCAGGACGAGATGGAGGGTGGATTCCTTTTGAATATTGTAGTCGCTG 60809 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||| || || |||| | ||||||||||||||| || Sbjct 60808 AGGGTGCGACCGTCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGA 60749 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || || || ||| || ||||| | ||| | ||||| | | || | Sbjct 60748 ATTCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATTGTATCACTTGCTTCAACT 60689 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || || || || ||||| || ||||| |||||||| Sbjct 60688 TCAAGTGTAATCGTCTTGCCCGTCAGAGTCTTCACGAAGATCTGCAT 60642 Score = 122 bits (134), Expect = 8e-23 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || | ||| | ||| ||||||||||| |||||||| ||||| Sbjct 62163 CCACCACGCAGACGGAGGACAAGATGGAGGGTAGACTCCTTTTGGATGTTGTAGTCGCTG 62104 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || || |||| | ||||||||||||||| || Sbjct 62103 AGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGA 62044 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || || || ||| || ||||| | ||| | || || | | ||| | Sbjct 62043 ATTCCCTCCTTATCCTGGATCTTAGCCTTGACGTTCTCAATTGTGTCACTTGCCTCCACT 61984 Query 131188 TCGACGGTAACGGTTTTACC 131207 |||| ||||| ||| ||||| Sbjct 61983 TCGAGGGTAATGGTCTTACC 61964 Score = 118 bits (130), Expect = 1e-21 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| ||||| || || | ||| ||||| || ||||||||||| ||||| Sbjct 61453 CCACCACGCAGACGGAGCACCAAGTGAAGGGTGGACTCTTTCTGAATGTTGTAGTCGCTG 61394 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||| || ||||| || || || |||| | ||||||||||||||| ||| Sbjct 61393 AGGGTTCGGCCGTCTTCCAGCTGTTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGG 61334 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || || || ||| || ||||| | ||| | || || | | ||| | Sbjct 61333 ATTCCCTCCTTATCCTGGATCTTGGCCTTGACGTTCTCAATTGTGTCACTTGCCTCCACT 61274 Query 131188 TCGACGGTAACGGTTTTACCGGT 131210 |||| ||||| ||| ||||| || Sbjct 61273 TCGAGGGTAATGGTCTTACCTGT 61251 Score = 118 bits (130), Expect = 1e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| ||||| || || | ||| ||||| || || |||||||| ||||| Sbjct 61802 CCACCACGCAGACGGAGCACCAAGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCGCTG 61743 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || || |||| | ||||||||||||||| || Sbjct 61742 AGGGTGCGGCCATCCTCCAGCTGCTTTCCGGCAAAGATCAGACGCTGCTGGTCCGGGGGA 61683 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || || || ||| || ||||| | ||| | ||||| | | ||| | Sbjct 61682 ATTCCCTCCTTATCTTGGATCTTGGCCTTGACATTCTCAATTGTATCACTTGCCTCCACT 61623 Query 131188 TCGACGGTAACGGTTTTACC 131207 |||| ||||| ||| || || Sbjct 61622 TCGAGGGTAATGGTCTTGCC 61603 >seq18 Length=819520 Score = 122 bits (134), Expect = 8e-23 Identities = 174/244 (71%), Gaps = 2/244 (1%) Strand=Plus/Minus Query 130991 ATCACTTTCACCATGAGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTT 131050 |||||| ||| | | ||||| |||| ||||| || || || | |||||||| || | Sbjct 141063 ATCACTCGCAC--TCATCCACCCCGCAGACGCAAGACCAAGTGCAGCGTCGACTCTTTCT 141006 Query 131051 GAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAAC 131110 | |||||||||||| || ||||| ||||| ||||||||||| || | || | | Sbjct 141005 GGATGTTGTAATCGGACAGCGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAAATGAGCC 140946 Query 131111 GCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAG 131170 ||||||||||||| ||||| ||||| ||||| ||| ||| ||||| | ||| | | Sbjct 140945 GCTGCTGGTCCGGCGGGATACCTTCCTTGTCTTGGATCTTCGCCTTGACGTTCTCGATCG 140886 Query 131171 TATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCT 131230 | |||| | || | |||| || | || || ||||| || || || || ||||| | Sbjct 140885 TGTCGGAAGCTTCCACCTCGAGTGTGATAGTCTTCCCGGTCAGCGTCTTGACAAAAATTT 140826 Query 131231 GCAT 131234 |||| Sbjct 140825 GCAT 140822 Score = 109 bits (120), Expect = 5e-19 Identities = 110/143 (77%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| ||||| | ||| | |||||| || || || || ||||||||| | Sbjct 140468 CCACCACGGAGACGGAGCACGAGATGGAGGGTCGATTCTTTCTGGATATTGTAATCGGAC 140409 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||| || ||||||||||| ||| | || | |||||||||||||||||| Sbjct 140408 AGGGTTCGGCCGTCTTCCAGCTGCTTGCCAGCGAAAATGAGACGCTGCTGGTCCGGAGGA 140349 Query 131128 ATTCCTTCTTTGTCGGTGATTTT 131150 ||||| || ||||| |||||| Sbjct 140348 ATTCCCTCCTTGTCCTGGATTTT 140326 >seq98 Length=303023 Score = 98.7 bits (108), Expect = 9e-16 Identities = 143/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 46084 ATGCCGTGCGTGCGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCG 46143 ||||| ||||| | |||||| |||||||||| | | ||||| | ||||| || ||| Sbjct 281306 ATGCCTTGCGTCAGGAAGAAAGCCGACTGGGCACTCAGCTGGATGAGCAGCACCAACGCC 281365 Query 46144 ACTTTCGCCGAGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGT 46203 || | | || || || ||||||||||| |||||||| |||| || ||| Sbjct 281366 ACCTATGGAGAACGCATCGTGGCCTTTGCCTCGGTGGAGGGGATCTTCTTCAGCGGCTCA 281425 Query 46204 TTTGCCGCCATCTTTTACATCAAAACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAAC 46263 || ||| ||||||| | |||||| ||| ||||||||||| |||| || ||||| Sbjct 281426 TTCGCCTCCATCTTCTGGCTCAAAAAACGGGGACTCATGCCCGGCTTGACATTCAGCAAT 281485 Query 46264 GAGCTGATATCGCGCGACGAGG 46285 ||||| || ||||| |||| Sbjct 281486 GAGCTCATCAGTCGCGATGAGG 281507 >seq92 Length=311103 Score = 87.8 bits (96), Expect = 2e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | ||||| || | ||| | |||||||||||| |||||||| ||||| Sbjct 304151 CCGCCGCGGAGGCGCAGGACGAGATGGAGGGTCGACTCCTTCTGAATGTTATAATCAGCG 304092 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| | ||| || ||||| || || || | || || |||||||||||||||||| Sbjct 304091 AGGGTCCTTCCGTCTTCCAGCTGTTTCCCGGCAAAAATCAACCGCTGCTGGTCCGGAGGG 304032 Query 131128 ATTCCT 131133 |||||| Sbjct 304031 ATTCCT 304026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472004415872640